FN Archimer Export Format
PT J
TI PenBase, the shrimp antimicrobial peptide penaeidin database: Sequence-based classification and recommended nomenclature
BT 
AF GUEGUEN, Yannick
   GARNIER, Julien
   ROBERT, Lorenne
   LEFRANC, Marie-Paule
   MOUGENOT, Isabelle
   DE LORGERIL, Julien
   JANECH, Michael
   GROSS, Paul S.
   WARR, Gregory W.
   CUTHBERTSON, Brandon
   BARRACCO, Margherita A.
   BULET, Philippe
   AUMELAS, André
   YANG, Yinshan
   BO, Dong
   XIANG, Jianhai
   TASSANAKAJON, Anchalee
   PIQUEMAL, Piquemal
   BACHERE, Evelyne
AS 1:1;2:1;3:1;4:2;5:3;6:1;7:1;8:4;9:4;10:4;11:5;12:6;13:7;14:7;15:8;16:8;17:9;18:10;19:1;
FF 1:PDG-DOP-DCN-AGSAE-GPIA;2:;3:PDG-DRV-RA-DRIM;4:;5:;6:PDG-DOP-DCN-AGSAE-GPIA;7:;8:;9:;10:;11:;12:;13:;14:;15:;16:;17:;18:;19:PDG-DOP-DCN-AGSAE-GPIA;
C1 Ifremer, Univ Montpellier 2, CNRS, F-34095 Montpellier 6, France.
   Univ Montpellier 2, LIGM, Inst France, UPR 1142,CNRS, F-34396 Montpellier, France.
   Univ Montpellier 2, CNRS, UMR 5506, LIRMM, F-34392 Montpellier 5, France.
   Med Univ S Carolina, Dept Biochem & Mol Biol, Charleston, SC 29425 USA.
   Univ Fed Santa Catarina, Dept Biol Celular Embriol & Genet, Florianopolis, SC, Brazil.
   Atheris Labs, CH-1233 Geneva, Switzerland.
   Univ Montpellier 1, Ctr Biochim Struct, F-34060 Montpellier 2, France.
   Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China.
   Chulalongkorn Univ, Dept Biochem, Fac Sci, Shrimp Mol Biol & Genom Lab, Bangkok 10330, Thailand.
   Univ Montpellier 2, Skuld Tech Co, F-34095 Montpellier 5, France.
C2 IFREMER, FRANCE
   UNIV MONTPELLIER, FRANCE
   UNIV MONTPELLIER, FRANCE
   UNIV MED S CAROLINA, USA
   UNIV FED SANTA CATARINA, BRAZIL
   ATHERIS LABS, SWITZERLAND
   UNIV MONTPELLIER, FRANCE
   CHINESE ACAD SCI, CHINA
   UNIV CHULALONGKORN, THAILAND
   UNIV MONTPELLIER, FRANCE
SI MONTPELLIER
SE PDG-DOP-DCN-AGSAE-GPIA
   PDG-DRV-RA-DRIM
IN WOS Ifremer jusqu'en 2018
   copubli-france
   copubli-univ-france
   copubli-int-hors-europe
   copubli-sud
IF 3.399
TC 127
UR https://archimer.ifremer.fr/doc/2006/publication-2332.pdf
LA English
DT Article
DE ;Nomenclature;Sequence database;Crustacea;Antimicrobial peptide;Penaeid shrimp;Penaeidin
AB Antimicrobial peptides play a major role in innate immunity. The penaeidins, initially characterized from the shrimp Litopenaeus vannamei, are a family of antimicrobial peptides that appear to be expressed in all penaeid shrimps. As of recent, a large number of penaeid nucleotide sequences have been identified from a variety of penaeid shrimp species and these sequences currently reside in several databases under unique identifiers with no nomenclatural continuity. To facilitate research in this field and avoid potential confusion due to a diverse number of nomenclatural designations, we have made a systematic effort to collect, analyse, and classify all the penaeidin sequences available in every database. We have identified a common penaeidin signature and subsequently established a classification based on amino acid sequences. In order to clarify the naming process, we have introduced a 'penaeidin nomenclature' that can be applied to all extant and future penaeidins. A specialized database, PenBase, which is freely available at http://www.penbase.immunaqua.com, has been developed for the penaeidin family of antimicrobial peptides, to provide comprehensive information about their properties, diversity and nomenclature. (c) 2005 Elsevier Ltd. All rights reserved.
PY 2006
SO Developmental & Comparative Immunology
SN 0145-305X
PU Elsevier
VL 30
IS 3
UT 000234732500005
BP 283
EP 288
DI 10.1016/j.dci.2005.04.003
ID 2332
ER

EF