FN Archimer Export Format
PT J
TI The Phaeodactylum genome reveals the evolutionary history of diatom genomes
BT 
AF BOWLER, C
   ALLEN, A
   BADGER, J
   GRIMWOOD, J
   JABBARI, K
   KUO, A
   MAHESWARI, U
   MARTENS, C
   MAUMUS, F
   OTILLAR, R
   RAYKO, E
   SALAMOV, A
   VANDEPOELE, K
   BESZTERI, B
   GRUBER, A
   HEIJDE, M
   KATINKA, M
   MOCK, T
   VALENTIN, K
   VERRET, F
   BERGES, J
   BROWNLEE, C
   CADORET, Jean-Paul
   CHIOVITTI, A
   CHOI, C
   COESEL, S
   DE MARTINO, A
   DETTER, J
   DURKIN, C
   FALCIATORE, A
   FOURNET, J
   HARUTA, M
   HUYSMAN, M
   JENKINS, B
   JIROUTOVA, K
   JORGENSEN, R
   JOUBERT, Y
   KAPLAN, A
   KROGER, N
   KROTH, P
   LA ROCHE, J
   LINDQUIST, E
   LOMMER, M
   MARTIN JEZEQUEL, V
   LOPEZ, P
   LUCAS, S
   MANGOGNA, M
   MCGINNIS, K
   MEDLIN, L
   MONTSANT, A
   OUDOT LE SECQ, M
   NAPOLI, C
   OBORNIK, M
   PARKER, M
   PETIT, J
   PORCEL, B
   POULSEN, N
   ROBISON, M
   RYCHLEWSKI, L
   RYNEARSON, T
   SCHMUTZ, J
   SHAPIRO, H
   SIAUT, M
   STANLEY, M
   SUSSMAN, M
   TAYLOR, A
   VARDI, A
   VON DASSOW, P
   VYVERMAN, W
   WILLIS, A
   WYRWICZ, L
   ROKHSAR, D
   WEISSENBACH, J
   ARMBRUST, E
   GREEN, B
   VAN DE PEER, Y
AS 1:1,2;2:1,3;3:3;4:4;5:1;6:5;7:1;8:6;9:1;10:5;11:1;12:5;13:6;14:7;15:8;16:1;17:9;18:10;19:7;20:11;21:12;22:11;23:13;24:14;25:12;26:2;27:1;28:5;29:10;30:2;31:15;32:16;33:6,17;34:18,19;35:20,21;36:22,23;37:15;38:24;39:25,26,27;40:8;41:28;42:5;43:28;44:15;45:1;46:5;47:2;48:22,23;49:7,11;50:1,2;51:29;52:22,23;53:20,21;54:10;55:9;56:9;57:30;58:16;59:31;60:32;61:4;62:5;63:2;64:33;65:16;66:11,34;67:1,35;68:36;69:17;70:14;71:31;72:5;73:9;74:10;75:29;76:6;77:5;
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C1 Ecole Normale Super, CNRS, Dept Biol, UMR8186, F-75005 Paris, France.
   Stn Zool A Dohrn, I-80121 Naples, Italy.
   J Craig Venter Inst, San Diego, CA 92121 USA.
   Stanford Human Genome Ctr, Joint Genome Inst Stanford, Palo Alto, CA 94304 USA.
   Joint Genome Inst, Walnut Creek, CA 94598 USA.
   Univ Ghent VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium.
   Alfred Wegener Inst Polar & Marine Res, D-27570 Bremerhaven, Germany.
   Univ Konstanz, Fachbereich Biol, D-78457 Constance, Germany.
   CNRS, CEA Inst Genom, UMR 8030, F-91057 Evry, France.
   Univ Washington, Sch Oceanog, Seattle, WA 98195 USA.
   Marine Biol Assoc United Kingdom Lab, Plymouth PL1 2PB, Devon, England.
   Univ Wisconsin, Dept Biol Sci, Milwaukee, WI 53201 USA.
   IFREMER, PBA, F-44311 Nantes 03, France.
   Univ Melbourne, Sch Bot, Melbourne, Vic 3010, Australia.
   Univ Nantes, Lab Mer Mol Sante, Fac Tech Sci, EA 2160, F-44322 Nantes 3, France.
   Univ Wisconsin, Ctr Biotechnol, Madison, WI 53706 USA.
   Univ Ghent, Lab Protistol & Aquat Ecol, B-9000 Ghent, Belgium.
   Univ Rhode Isl, Dept Cell & Mol Biol, Kingston, RI 02881 USA.
   Univ Rhode Isl, Grad Sch Oceanog, Kingston, RI 02881 USA.
   Acad Sci Czech Republic, Inst Parasitol, Ctr Biol, CR-37005 Ceske Budejovice, Czech Republic.
   Univ S Bohemia, Fac Sci, CR-37005 Ceske Budejovice, Czech Republic.
   Univ Arizona, Bio5 Inst, Tucson, AZ 85719 USA.
   Univ Arizona, Dept Plant Sci, Tucson, AZ 85719 USA.
   Hebrew Univ Jerusalem, Dept Plant & Environm Sci, IL-91904 Jerusalem, Israel.
   Georgia Inst Technol, Sch Chem & Biochem, Atlanta, GA 30332 USA.
   Georgia Inst Technol, Sch Mat Sci & Engn, Atlanta, GA 30332 USA.
   Georgia Inst Technol, Sch Biol, Atlanta, GA 30332 USA.
   Leibniz Inst Marine Sci, D-24105 Kiel, Germany.
   Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada.
   Georgia Inst Technol, Sch Chem & Biochem, Atlanta, GA 30332 USA.
   BioInfoBank Inst, PL-60744 Poznan, Poland.
   Univ Rhode Isl, Grad Sch Oceanog, Narragansett, RI 02882 USA.
   Dunstaffnage Marine Res Lab, Scottish Assoc Marine Sci, Oban PA37 1QA, Argyll, Scotland.
   Univ N Carolina, Dept Biol & Marine Biol, Wilmington, NC 28403 USA.
   Rutgers State Univ, Inst Marine & Coastal Sci, Environm Biophys & Mol Ecol Grp, New Brunswick, NJ 08901 USA.
   CNRS, Biol Stn, UMR7144, F-29682 Roscoff, France.
C2 ENS, FRANCE
   STN ZOOL ANTON DOHRN, ITALY
   J CRAIG VENTER INST, USA
   STANFORD HUMAN GENOME CTR, USA
   JOINT GENOME INST, USA
   UNIV GHENT, BELGIUM
   INST A WEGENER, GERMANY
   UNIV KONSTANZ, GERMANY
   CNRS, FRANCE
   UNIV WASHINGTON, USA
   MBA, UK
   UNIV WISCONSIN, USA
   IFREMER, FRANCE
   UNIV MELBOURNE, AUSTRALIA
   UNIV NANTES, FRANCE
   UNIV WISCONSIN, USA
   UNIV GHENT, BELGIUM
   UNIV RHODE ISL, USA
   UNIV RHODE ISL, USA
   ACAD SCI CZECH REPUBLIC, CZECH REPUBLIC
   UNIV S BOHEMIA, CZECH REPUBLIC
   UNIV ARIZONA, USA
   UNIV ARIZONA, USA
   HEBREW UNIV JERUSALEM, ISRAEL
   GEORGIA INST TECHNOL, USA
   GEORGIA INST TECHNOL, USA
   GEORGIA INST TECHNOL, USA
   LEIBNIZ INST MARINE SCI, GERMANY
   UNIV BRITISH COLUMBIA, CANADA
   GEORGIA INST TECHNOL, USA
   BIOINFOBANK INST, POLAND
   UNIV RHODE ISL, USA
   SAMS SCOTLAND, UK
   UNIV N CAROLINA, USA
   UNIV RUTGERS STATE, USA
   CNRS, FRANCE
SI NANTES
SE PDG-DOP-DCB-BM-PBA
IN WOS Ifremer jusqu'en 2018
   copubli-france
   copubli-europe
   copubli-univ-france
   copubli-int-hors-europe
IF 31.434
TC 1094
UR https://archimer.ifremer.fr/doc/2008/publication-4809.pdf
LA English
DT Article
AB Diatoms are photosynthetic secondary endosymbionts found throughout marine and freshwater environments, and are believed to be responsible for around one- fifth of the primary productivity on Earth(1,2). The genome sequence of the marine centric diatom Thalassiosira pseudonana was recently reported, revealing a wealth of information about diatom biology(3-5). Here we report the complete genome sequence of the pennate diatom Phaeodactylum tricornutum and compare it with that of T. pseudonana to clarify evolutionary origins, functional significance and ubiquity of these features throughout diatoms. In spite of the fact that the pennate and centric lineages have only been diverging for 90 million years, their genome structures are dramatically different and a substantial fraction of genes (similar to 40%) are not shared by these representatives of the two lineages. Analysis of molecular divergence compared with yeasts and metazoans reveals rapid rates of gene diversification in diatoms. Contributing factors include selective gene family expansions, differential losses and gains of genes and introns, and differential mobilization of transposable elements. Most significantly, we document the presence of hundreds of genes from bacteria. More than 300 of these gene transfers are found in both diatoms, attesting to their ancient origins, and many are likely to provide novel possibilities for metabolite management and for perception of environmental signals. These findings go a long way towards explaining the incredible diversity and success of the diatoms in contemporary oceans.
PY 2008
PD NOV
SO Nature
SN 0028-0836
PU Nature
VL 456
IS 7219
UT 000261039300040
BP 239
EP 244
DI 10.1038/nature07410
ID 4809
ER

EF