FN Archimer Export Format
PT J
TI Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing
BT 
AF MASSANA, Ramon
   GOBET, Angelique
   AUDIC, Stephane
   BASS, David
   BITTNER, Lucie
   BOUTTE, Christophe
   CHAMBOUVET, Aurelie
   CHRISTEN, Richard
   CLAVERIE, Jean-Michel
   DECELLE, Johan
   DOLAN, John R.
   DUNTHORN, Micah
   EDVARDSEN, Bente
   FORN, Irene
   FORSTER, Dominik
   GUILLOU, Laure
   JAILLON, Olivier
   KOOISTRA, Wiebe H. C. F.
   LOGARES, Ramiro
   MAHE, Frederic
   NOT, Fabrice
   OGATA, Hiroyuki
   PAWLOWSKI, Jan
   PERNICE, Massimo C.
   PROBERT, Ian
   ROMAC, Sarah
   RICHARDS, Thomas
   SANTINI, Sebastien
   SHALCHIAN-TABRIZI, Kamran
   SIANO, Raffaele
   SIMON, Nathalie
   STOECK, Thorsten
   VAULOT, Daniel
   ZINGONE, Adriana
   DE VARGAS, Colomban
AS 1:1;2:2,3;3:2,3;4:4,5;5:2,3,6;6:2,3;7:7;8:8;9:9;10:2,3;11:10;12:6;13:11;14:1;15:6;16:2,3;17:12;18:13;19:1;20:6;21:2,3;22:14;23:15;24:1;25:2,3;26:2,3;27:7;28:9;29:11;30:16;31:2,3;32:6;33:2,3;34:13;35:2,3;
FF 1:;2:;3:;4:;5:;6:;7:;8:;9:;10:;11:;12:;13:;14:;15:;16:;17:;18:;19:;20:;21:;22:;23:;24:;25:;26:;27:;28:;29:;30:PDG-ODE-DYNECO-PELAGOS;31:;32:;33:;34:;35:;
C1 CSIC, Inst Ciencias Mar, ES-08003 Barcelona, Catalonia, Spain.
   CNRS, Ecol Systemat Evolut, FR-29682 Roscoff, France.
   Univ Paris 06, Equipe EPPO Evolut Plancton & PaleoOceans, UMR7144, Roscoff, France.
   Nat Hist Museum, London SW7 5BD, England.
   Cefas, Weymouth DT4 8UB, Dorset, England.
   Univ Kaiserslautern, D-67663 Kaiserslautern, Germany.
   Univ Exeter, Biosci, Exeter EX4 4QD, Devon, England.
   Univ Nice Sophia Antipolis, CNRS, UMR 7138, FR-06108 Nice, France.
   Aix Marseille Univ, CNRS, UMR 7256, FR-13288 Marseille, France.
   Univ Paris 06, CNRS, Lab Oceanog Villefranche, UMR 7093, FR-06230 Villefranche Sur Mer, France.
   Univ Oslo, Dept Biosci, N-0316 Oslo, Norway.
   CEA, Genoscope, FR-91000 Evry, France.
   Stn Zool Anton Dohrn, I-80121 Naples, Italy.
   Kyoto Univ, Inst Chem Res, Uji, Kyoto 6110011, Japan.
   Univ Geneva, CH-1211 Geneva, Switzerland.
   Ifremer DYNECO Pelagos, Plouzane, France.
C2 CMIMA-CSIC, SPAIN
   CNRS, FRANCE
   UNIV PARIS 06, FRANCE
   NHM, UK
   CEFAS, UK
   UNIV KAISERSLAUTERN, GERMANY
   UNIV EXETER, UK
   UNIV NICE, FRANCE
   UNIV AIX MARSEILLE, FRANCE
   UNIV PARIS 06, FRANCE
   UNIV OSLO, NORWAY
   CEA, FRANCE
   STN ZOOL ANTON DOHRN, ITALY
   UNIV KYOTO, JAPAN
   UNIV GENEVA, SWITZERLAND
   IFREMER, FRANCE
SI BREST
SE PDG-ODE-DYNECO-PELAGOS
IN WOS Ifremer jusqu'en 2018
   copubli-france
   copubli-europe
   copubli-univ-france
   copubli-int-hors-europe
IF 5.932
TC 281
UR https://archimer.ifremer.fr/doc/00275/38594/37123.pdf
   https://archimer.ifremer.fr/doc/00275/38594/37190.pdf
   https://archimer.ifremer.fr/doc/00275/38594/38772.zip
LA English
DT Article
BO Neomysis
AB Although protists are critical components of marine ecosystems, they are still poorly characterized. Here we analysed the taxonomic diversity of planktonic and benthic protist communities collected in six distant European coastal sites. Environmental deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) from three size fractions (pico-, nano- and micro/mesoplankton), as well as from dissolved DNA and surface sediments were used as templates for tag pyrosequencing of the V4 region of the 18S ribosomal DNA. Beta-diversity analyses split the protist community structure into three main clusters: picoplankton-nanoplankton-dissolved DNA, micro/mesoplankton and sediments. Within each cluster, protist communities from the same site and time clustered together, while communities from the same site but different seasons were unrelated. Both DNA and RNA-based surveys provided similar relative abundances for most class-level taxonomic groups. Yet, particular groups were overrepresented in one of the two templates, such as marine alveolates (MALV)-I and MALV-II that were much more abundant in DNA surveys. Overall, the groups displaying the highest relative contribution were Dinophyceae, Diatomea, Ciliophora and Acantharia. Also, well represented were Mamiellophyceae, Cryptomonadales, marine alveolates and marine stramenopiles in the picoplankton, and Monadofilosa and basal Fungi in sediments. Our extensive and systematic sequencing of geographically separated sites provides the most comprehensive molecular description of coastal marine protist diversity to date.
PY 2015
PD OCT
SO Environmental Microbiology
SN 1462-2912
PU Wiley-blackwell
VL 17
IS 10
UT 000363448500045
BP 4035
EP 4049
DI 10.1111/1462-2920.12955
ID 38594
ER

EF