FN Archimer Export Format
PT J
TI The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors
BT 
AF EPELBOIN, Yanouk
   QUINTRIC, Laure
   GUEVELOU, Eric
   BOUDRY, Pierre
   PICHEREAU, Vianney
   CORPOREAU, Charlotte
AS 1:1;2:2;3:1,4;4:1;5:3;6:1;
FF 1:PDG-RBE-PFOM-PI;2:PDG-IMN-IDM-RIC;3:PDG-RBE-PFOM-PI;4:PDG-RBE-PFOM;5:;6:PDG-RBE-PFOM-PI;
C1 IFREMER, UMR CNRS UBO IRD Ifremer 6539, Lab Sci Environm Marin, Plouzane, France.
   IFREMER, Serv Ressources Informat & Commun, Plouzane, France.
   UBO, UMR CNRS UBO IRD Ifremer 6539, Lab Sci Environm Marin, Plouzane, France.
   Virginia Inst Marine Sci, Coll William & Mary, Aquaculture Genet & Breeding Technol Ctr, Gloucester Point, VA 23062 USA.
C2 IFREMER, FRANCE
   IFREMER, FRANCE
   UBO, FRANCE
   VIRGINIA INST MARINE SCI, USA
SI BREST
SE PDG-RBE-PFOM-PI
   PDG-IMN-IDM-RIC
   PDG-RBE-PFOM
UM LEMAR
IN WOS Ifremer jusqu'en 2018
   DOAJ
   copubli-france
   copubli-univ-france
   copubli-int-hors-europe
IF 2.806
TC 14
UR https://archimer.ifremer.fr/doc/00340/45069/44494.pdf
   https://archimer.ifremer.fr/doc/00340/45069/44495.csv
   https://archimer.ifremer.fr/doc/00340/45069/44496.pdf
LA English
DT Article
AB Oysters play an important role in estuarine and coastal marine habitats, where the majority of humans live. In these ecosystems, environmental degradation is substantial, and oysters must cope with highly dynamic and stressful environmental constraints during their lives in the intertidal zone. The availability of the genome sequence of the Pacific oyster Crassostrea gigas represents a unique opportunity for a comprehensive assessment of the signal transduction pathways that the species has developed to deal with this unique habitat. We performed an in silico analysis to identify, annotate and classify protein kinases in C. gigas, according to their kinase domain taxonomy classification, and compared with kinome already described in other animal species. The C. gigas kinome consists of 371 protein kinases, making it closely related to the sea urchin kinome, which has 353 protein kinases. The absence of gene redundancy in some groups of the C. gigas kinome may simplify functional studies of protein kinases. Through data mining of transcriptomes in C. gigas, we identified part of the kinome which may be central during development and may play a role in response to various environmental factors. Overall, this work contributes to a better understanding of key sensing pathways that may be central for adaptation to a highly dynamic marine environment.
PY 2016
PD MAY
SO Plos One
SN 1932-6203
PU Public Library Science
VL 11
IS 5
UT 000376883000004
DI 10.1371/journal.pone.0155435
ID 45069
ER

EF