FN Archimer Export Format
PT J
TI Bacterial community characterization of water and intestine of the shrimp Litopenaeus stylirostris in a biofloc system
BT 
AF CARDONA, Emilie
   GUEGUEN, Yannick
   MAGRE, Kevin
   LORGEOUX, Benedicte
   PIQUEMAL, David
   PIERRAT, Fabien
   NOGUIER, Florian
   SAULNIER, Denis
AS 1:1,2;2:1,4;3:1;4:1;5:3;6:3;7:3;8:1;
FF 1:PDG-RBE-LEADNC;2:PDG-RBE-IHPE;3:PDG-RBE-RMPF;4:;5:;6:;7:;8:PDG-RBE-RMPF;
C1 IFREMER, UMR EIO 241, UPF ILM IRD, Labex Corail, BP 7004, Taravao 98719, Tahiti, Fr Polynesia.
   IFREMER, Unite Rech Lagons Ecosyst & Aquaculture Durable N, Noumea, New Caledonia.
   ACOBIOM, 1682 Rue Valsiere,Cap Delta CS77394, F-34184 Montpellier, France.
   Univ Montpellier, IFREMER, CNRS, UMR IHPE 5244,UPVD, F-34095 Montpellier, France.
C2 IFREMER, FRANCE
   IFREMER, FRANCE
   ACOBIOM, FRANCE
   UNIV MONTPELLIER, FRANCE
SI TAHITI
   MONTPELLIER
SE PDG-RBE-LEADNC
   PDG-RBE-IHPE
   PDG-RBE-RMPF
UM IHPE
   EIO
IN WOS Ifremer jusqu'en 2018
   DOAJ
   copubli-france
   copubli-univ-france
IF 2.644
TC 182
UR https://archimer.ifremer.fr/doc/00346/45694/45314.pdf
LA English
DT Article
DE ;Shrimp;Biofloc;Clear sea water;Bacterial communities;Culture environment;Microbiota
AB Background  Biofloc technology (BFT), a rearing method with little or no water exchange, is gaining popularity in aquaculture. In the water column, such systems develop conglomerates of microbes, algae and protozoa, together with detritus and dead organic particles. The intensive microbial community presents in these systems can be used as a pond water quality treatment system, and the microbial protein can serve as a feed additive. The current problem with BFT is the difficulty of controlling its bacterial community composition for both optimal water quality and optimal shrimp health. The main objective of the present study was to investigate microbial diversity of samples obtained from different culture environments (Biofloc technology and clear seawater) as well as from the intestines of shrimp reared in both environments through high-throughput sequencing technology. Results  Analyses of the bacterial community identified in water from BFT and “clear seawater” (CW) systems (control) containing the shrimp Litopenaeus stylirostris revealed large differences in the frequency distribution of operational taxonomic units (OTUs). Four out of the five most dominant bacterial communities were different in both culture methods. Bacteria found in great abundance in BFT have two principal characteristics: the need for an organic substrate or nitrogen sources to grow and the capacity to attach to surfaces and co-aggregate. A correlation was found between bacteria groups and physicochemical and biological parameters measured in rearing tanks. Moreover, rearing-water bacterial communities influenced the microbiota of shrimp. Indeed, the biofloc environment modified the shrimp intestine microbiota, as the low level (27 %) of similarity between intestinal bacterial communities from the two treatments. Conclusion  This study provides the first information describing the complex biofloc microbial community, which can help to understand the environment-microbiota-host relationship in this rearing system.
PY 2016
PD JUN
SO Bmc Microbiology
SN 1471-2180
PU Biomed Central Ltd
VL 16
IS 157
UT 000379893900004
DI 10.1186/s12866-016-0770-z
ID 45694
ER

EF