FN Archimer Export Format
PT J
TI Response of Core Microbial Consortia to Chronic Hydrocarbon Contaminations in Coastal Sediment Habitats
BT 
AF JEANBILLE, Mathilde
   GURY, Jerome
   DURAN, Robert
   TRONCZYNSKI, Jacek
   AGOGUE, Helene
   BEN SAID, Olfa
   GHIGLIONE, Jean-Francois
   AUGUET, Jean-Christophe
AS 1:1;2:1;3:1;4:2;5:3;6:1,4;7:5;8:6;
FF 1:;2:;3:;4:PDG-RBE-BE;5:;6:;7:;8:;
C1 Univ Pau & Pays Adour, Equipe Environm & Microbiol, Inst Pluridisciplinaire Rech Environm & Mat, CNRS,UMR 5254, Pau, France.
   IFREMER, Ctr Atlantique, Dept Ressources Biol & Environm, Lab Biogeochim Contaminants Organ,Unite Biogeochi, Nantes, France.
   Univ La Rochelle, CNRS, UMR 7266, Littoral Environm & Soc, La Rochelle, France.
   Fac Sci Bizerte, Lab Biosurveillance Environm, Zarzouna, Tunisia.
   Univ Paris 06, CNRS, UMR 7621, Lab Oceanog Microbienne,Sorbonne Univ, Banyuls Sur Mer, France.
   CNRS, UMR 9190, Marine Biodivers Exploitat & Conservat, Montpellier, France.
C2 UNIV PAU & PAYS ADOUR, FRANCE
   IFREMER, FRANCE
   UNIV LA ROCHELLE, FRANCE
   UNIV CARTHAGE, TUNISIA
   UNIV PARIS 06, FRANCE
   CNRS, FRANCE
SI NANTES
SE PDG-RBE-BE
UM MARBEC
IN WOS Ifremer jusqu'en 2018
   DOAJ
   copubli-france
   copubli-univ-france
   copubli-int-hors-europe
   copubli-sud
IF 4.076
TC 64
UR https://archimer.ifremer.fr/doc/00355/46586/46394.pdf
LA English
DT Article
CR PERSMED 2
BO Antea
DE ;co-occurrence network;core community;microbial consortia;PAH;chronic contamination;coastal sediment
AB Traditionally, microbial surveys investigating the effect of chronic anthropogenic pressure such as polyaromatic hydrocarbons (PAHs) contaminations consider just the alpha and beta diversity and ignore the interactions among the different taxa forming the microbial community. Here, we investigated the ecological relationships between the three domains of life (i.e., Bacteria, Archaea, and Eukarya) using 454 pyrosequencing on the 16S rRNA and 18S rRNA genes from chronically impacted and pristine sediments, along the coasts of the Mediterranean Sea (Gulf of Lion, Vermillion coast, Corsica, Bizerte lagoon and Lebanon) and the French Atlantic Ocean (Bay of Biscay and English Channel). Our approach provided a robust ecological framework for the partition of the taxa abundance distribution into 859 core Operational taxonomic units (OTUs) and 6629 satellite OTUs. OTUs forming the core microbial community showed the highest sensitivity to changes in environmental and contaminant variations, with salinity, latitude, temperature, particle size distribution, total organic carbon (TOC) and PAH concentrations as main drivers of community assembly. The core communities were dominated by Gammaproteobacteria and Deltaproteobacteria for Bacteria, by Thaumarchaeota, Bathyarchaeota and Thermoplasmata for Archaea and Metazoa and Dinoflagellata for Eukarya. In order to find associations among microorganisms, we generated a co-occurrence network in which PAHs were found to impact significantly the potential predator – prey relationship in one microbial consortium composed of ciliates and Actinobacteria. Comparison of network topological properties between contaminated and non-contaminated samples showed substantial differences in the network structure and indicated a higher vulnerability to environmental perturbations in the contaminated sediments.
PY 2016
PD OCT
SO Frontiers In Microbiology
SN 1664-302X
PU Frontiers Media Sa
VL 7
IS 1637
UT 000388528600002
BP 1
EP 13
DI 10.3389/fmicb.2016.01637
ID 46586
ER

EF