FN Archimer Export Format PT J TI Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome BT AF Salazar, Guillem Paoli, Lucas Alberti, Adriana Huerta-Cepas, Jaime Cuenca, Miguelangel Field, Christopher M. Coelho, Luis Pedro Cruaud, Corinne Engelen, Stefan Gregory, Ann C. Labadie, Karine Marec, Claudie Pelletier, Eric Royo-Llonch, Marta Roux, Simon Sánchez, Pablo Uehara, Hideya Zayed, Ahmed A. Zeller, Georg Carmichael, Margaux Dimier, Céline Ferland, Joannie Kandels, Stefanie Picheral, Marc Pisarev, Sergey Poulain, Julie Acinas, Silvia G. Babin, Marcel Bork, Peer Bowler, Chris de Vargas, Colomban Guidi, Lionel Hingamp, Pascal Iudicone, Daniele Karp-Boss, Lee Karsenti, Eric Ogata, Hiroyuki Pesant, Stephane Speich, Sabrina Sullivan, Matthew B. Wincker, Patrick Sunagawa, Shinichi AS 1:1;2:1;3:2,3;4:4,14;5:1;6:1;7:5,6,14;8:3,7;9:3,7;10:8;11:3,7;12:9,10;13:2,3;14:11;15:8;16:11;17:12,13;18:8;19:14;20:3,15;21:3,16,17;22:3,18;23:14;24:3,16;25:19;26:2,3;27:11;28:18;29:14,20,21;30:3,17;31:3,15;32:3,15,22;33:3,23;34:24;35:25;36:17,26;37:12;38:27,28;39:29;40:8,30;41:2,3;42:1; FF 1:;2:;3:;4:;5:;6:;7:;8:;9:;10:;11:;12:;13:;14:;15:;16:;17:;18:;19:;20:;21:;22:;23:;24:;25:;26:;27:;28:;29:;30:;31:;32:;33:;34:;35:;36:;37:;38:;39:;40:;41:;42:; C1 Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich 8093, Switzerland Génomique Métabolique, Genoscope, Institut de biologie François Jacob, Commissariat à l’Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, Evry, France Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/GOSEE, 3 Rue Michel-Ange, Paris 75016, France Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) and Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid 28223, Spain Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai 200433, China Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China Genoscope, Institut de biologie François-Jacob, Commissariat à l’Energie Atomique (CEA), Université Paris-Saclay, Evry, France Department of Microbiology, the Ohio State University, Columbus, OH 43210, USA Département de biologie, Université Laval, QC G1V 0A6, Canada Laboratoire d’Oceanographie Physique et Spatiale, UMR 6523, CNRS-IFREMER-IRD-UBO, Plouzané, France Department of Marine Biology and Oceanography, Institute of Marine Sciences (ICM)-CSIC, Barcelona 08003, Spain Institute for Chemical Research, Kyoto Univerisity, Gokasho, Uji 611-0011, Japan Hewlett-Packard Japan, 2-2-1, Ojima, Koto-ku, Tokyo 136-8711, Japan Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg 69117, Germany Sorbonne Université & CNRS, UMR 7144 (AD2M), ECOMAP, Station Biologique de Roscoff, Place Georges Teissier, Roscoff 29680, France Sorbonne Université, CNRS, Laboratoire d’Océanographie de Villefanche, LOV, Villefranche-sur-mer 06230, France Institut de Biologie de l’ENS (IBENS), Département de biologie, École normale supérieure, CNRS, INSERM, Université PSL, Paris 75005, France Takuvik Joint International Laboratory, CNRS-Université Laval, QC G1V 0A6, Canada Shirshov Institute of Oceanology, Russian Academy of Sciences, Moscow 117997, Russia Max Delbrück Centre for Molecular Medicine, Berlin 13125, Germany Department of Bioinformatics, Biocenter, University of Würzburg, Würzburg 97074, Germany Department of Oceanography, University of Hawaii, Honolulu, HI 96822, USA Aix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France Stazione Zoologica Anton Dohrn, Naples 80121, Italy School of Marine Sciences, University of Maine, Orono, ME 04469, USA Directors’ Research European Molecular Biology Laboratory, Heidelberg 69117, Germany MARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany PANGAEA, Data Publisher for Earth and Environmental Science, University of Bremen, Bremen, Germany LMD/IPSL, ENS, PSL Research University, Paris, France Department of Civil, Environmental and Geodetic Engineering, the Ohio State University, Columbus, OH 43214, USA Center for RNA Biology, the Ohio State University, Columbus, OH 43214, USA C2 ETH ZURICH, SWITZERLAND CEA, FRANCE TARA OCEANS GOSEE, FRANCE UNIV POLITECN MADRID, SPAIN UNIV FUDAN, CHINA UNIV FUDAN, CHINA GENOSCOPE, FRANCE UNIV OHIO STATE, USA UNIV LAVAL, CANADA CNRS, FRANCE ICM CSIC, SPAIN UNIV KYOTO, JAPAN HEWLETT-PACKARD JAPAN, JAPAN EMBL, GERMANY CNRS, FRANCE UNIV PARIS 06, FRANCE ENS, FRANCE UNIV LAVAL, CANADA PP SHIRSHOV OCEANOL INST, RUSSIA MAX DELBRUCK CTR MOL MED, GERMANY UNIV WURZBURG, GERMANY UNIV HAWAII, USA UNIV AIX MARSEILLE, FRANCE STAZ ZOOL ANTON DOHRN, ITALY UNIV MAINE US, USA EMBL, GERMANY UNIV BREMEN MARUM, GERMANY UNIV BREMEN, GERMANY ENS, FRANCE UNIV OHIO STATE, USA UNIV OHIO STATE, USA UM LOPS IN WOS Cotutelle UMR copubli-france copubli-europe copubli-int-hors-europe copubli-sud IF 38.637 TC 171 UR https://archimer.ifremer.fr/doc/00591/70339/68396.pdf https://archimer.ifremer.fr/doc/00591/70339/68397.xlsx https://archimer.ifremer.fr/doc/00591/70339/68398.pdf https://archimer.ifremer.fr/doc/00591/70339/68399.mp4 LA English DT Article AB Ocean microbial communities strongly influence the biogeochemistry, food webs, and climate of our planet. Despite recent advances in understanding their taxonomic and genomic compositions, little is known about how their transcriptomes vary globally. Here, we present a dataset of 187 metatranscriptomes and 370 metagenomes from 126 globally distributed sampling stations and establish a resource of 47 million genes to study community-level transcriptomes across depth layers from pole-to-pole. We examine gene expression changes and community turnover as the underlying mechanisms shaping community transcriptomes along these axes of environmental variation and show how their individual contributions differ for multiple biogeochemically relevant processes. Furthermore, we find the relative contribution of gene expression changes to be significantly lower in polar than in non-polar waters and hypothesize that in polar regions, alterations in community activity in response to ocean warming will be driven more strongly by changes in organismal composition than by gene regulatory mechanisms. PY 2019 PD NOV SO Cell SN 0092-8674 PU Elsevier BV VL 179 IS 5 UT 000496914200007 DI 10.1016/j.cell.2019.10.014 ID 70339 ER EF