FN Archimer Export Format
PT J
TI Campylobacter armoricus sp. nov., a novel member of the Campylobacter lari group isolated from surface water and stools from humans with enteric infection
BT 
AF Boukerb, Amine M.
   Penny, Christian
   Serghine, Joelle
   Walczak, Cécile
   Cauchie, Henry-Michel
   Miller, William G.
   Losch, Serge
   Ragimbeau, Catherine
   Mossong, Joël
   Mégraud, Francis
   Lehours, Philippe
   Bénéjat, Lucie
   Gourmelon, Michele
AS 1:1;2:2;3:1;4:2;5:2;6:3;7:4;8:5;9:5;10:6,7;11:6,7;12:7;13:1;
FF 1:;2:;3:PDG-RBE-SGMM-LSEM;4:;5:;6:;7:;8:;9:;10:;11:;12:;13:PDG-RBE-SGMM-LSEM;
C1 Ifremer, RBE-SGMM-LSEM, Laboratoire Santé Environnement Microbiologie, Plouzané, France
   Luxembourg Institute of Science and Technology (LIST), Environmental Research and Innovation Department, Esch-sur-Alzette, Luxembourg
   US Department of Agriculture, Produce Safety and Microbiology Research Unit, Agricultural Research Service, Albany, CA, USA
   Laboratoire de Médecine Vétérinaire de l’Etat (LMVE), Veterinary Services Administration, Dudelange, Luxembourg
   Laboratoire National de Santé (LNS), Epidemiology and Microbial Genomics, Dudelange, Luxembourg
   INSERM, University of Bordeaux, UMR1053 Bordeaux Research In Translational Oncology, BaRITOn, Bordeaux, France
   French National Reference Centre for Campylobacter and Helicobacter, Pellegrin University Hospital, Bordeaux, France
C2 IFREMER, FRANCE
   LIST, LUXEMBOURG
   USDA, USA
   LMVE, LUXEMBOURG
   LAB NATL SANTE (LNS), LUXEMBOURG
   INSERM, FRANCE
   CNRCH, FRANCE
SI BREST
SE PDG-RBE-SGMM-LSEM
IN WOS Ifremer UPR
   copubli-france
   copubli-europe
   copubli-int-hors-europe
IF 2.004
TC 12
UR https://archimer.ifremer.fr/doc/00591/70346/69558.pdf
LA English
DT Article
DE ;Campylobacter;novel species;surface water;coastal catchment;human gastroenteritis;C. lari group;whole genorne sequence
AB During a study on the prevalence and diversity of members of the genus Campylobacter in a shellfish-harvesting area and its catchment in Brittany, France, six urease-positive isolates of members of the genus Campylobacter were recovered from surface water samples, as well as three isolates from stools of humans displaying enteric infection in the same period. These strains were initially identified as members of the Campylobacter lari group by MALDI-TOF mass spectrometry and placed into a distinct group in the genus Campylobacter, following atpA gene sequence analysis based on whole-genome sequencing data. This taxonomic position was confirmed by phylogenetic analysis of the 16S rRNA, rpoB and hsp60 (groEL) loci, and an analysis of the core genome that provided an improved phylogenetic resolution. The average nucleotide identity between the representative strain CA656T (CCUG 73571T=CIP 111675T) and the type strain of the most closely related species Campylobacter ornithocola WBE38T was 88.5 %. The strains were found to be microaerobic and anaerobic, motile, non-spore-forming, Gram-stain-negative, spiral-shaped bacteria that exhibit catalase, oxidase and urease activities but not nitrate reduction. This study demonstrates clearly that the nine isolates represent a novel species within the C. lari group, for which the name Campylobacter armoricus is proposed. Here, we present phenotypic and morphological features of the nine strains and the description of their genome sequences. The proposed type strain CA656T has a 1.589 Mbp chromosome with a DNA G+C content of 28.5 mol% and encodes 1588 predicted coding sequences, 38 tRNAs, and 3 rRNA operons.   
PY 2019
PD DEC
SO International Journal Of Systematic And Evolutionary Microbiology
SN 1466-5026
PU Microbiology Society
VL 69
IS 12
UT 000500924000046
BP 3969
EP 3979
DI 10.1099/ijsem.0.003836
ID 70346
ER

EF