FN Archimer Export Format
PT J
TI Biodiversity inventory of the grey mullets (Actinopterygii: Mugilidae) of the Indo‐Australian Archipelago through the iterative use of DNA‐based species delimitation and specimen assignment methods
BT 
AF Delrieu‐Trottin, Erwan
   Durand, Jean‐Dominique
   Limmon, Gino
   Sukmono, Tedjo
   Sugeha, Hagi Yulia
   Chen, Wei‐Jen
   Busson, Frédéric
   Borsa, Philippe
   Dahruddin, Hadi
   Sauri, Sopian
   Fitriana, Yuli
   Zein, Mochamad Syamsul Arifin
   Hocdé, Régis
   Pouyaud, Laurent
   Keith, Philippe
   Wowor, Daisy
   Steinke, Dirk
   Hanner, Robert
   Hubert, Nicolas
AS 1:1,2;2:3;3:4;4:5;5:6;6:7;7:8;8:1,9;9:10;10:1,11;11:11;12:11;13:11;14:3;15:1;16:9;17:11;18:12,13;19:12,13;20:1;
FF 1:;2:;3:;4:;5:;6:;7:;8:;9:;10:;11:;12:;13:;14:;15:;16:;17:;18:;19:;20:;
C1 UMR 5554 ISEM (IRD, UM CNRS EPHE) Université de Montpellier Place Eugène Bataillon 34095 Montpellier cedex France
   Museum für Naturkunde Leibniz Institute for Evolution and Biodiversity Science Invalidenstr. 4310115 Berlin ,Germany
   UMR 9190 MARBEC (IRD, UM CNRS IFREMER) Université de Montpellier cc093, Place Eugène Bataillon34095Montpellier cedex ,France
   Universitas Pattimura Maritime and Marine Science Center of Excellence Jalan Wim Reawaru 9C678267 Ambon Moluccas, Indonesia
   Universitas Jambi Departement of Biology Jalan Lintas Jambi ‐ Muara Bulian Km15 36122 Jambi Sumatra, Indonesia
   Politeknik Kelautan dan Perikanan Sorong KKD BP. SR SGK Tanjung Kasuari Jl. Kapitan PattimuraKota Sorong 98401,Papua Barat , Indonesia
   Research Center for Oceanography Indonesian Institute of Sciences Jl Ancol Timur Pasir Putih 1Jakarta 14430, Indonesia
   Institute of Oceanography National Taiwan University Taipei , Taiwan
   UMR 7208 BOREA (MNHN CNRS UPMC IRD UCBN) Muséum National d’Histoire Naturelle 43 rue Cuvier 75231Paris cedex, France
   UMR 250 ENTROPIE (IRD, UR UNC CNRS IFREMER) centre IRD‐Occitanie 911 avenue Agropolis 34394 Montpellier ,France
   Division of Zoology Research Center for Biology Indonesian Institute of Sciences (LIPI) Jalan Raya Jakarta Bogor Km 46Cibinong 16911, Indonesia
   Centre for Biodiversity Genomics University of Guelph Ontario, Canada
   Department of Integrative Biology University of Guelph Guelph Ontario ,Canada
C2 UNIV MONTPELLIER, FRANCE
   LEIBNIZ INST EVOL BIODIVERS SCI, GERMANY
   UNIV MONTPELLIER, FRANCE
   UNIV PATTIMURA, INDONESIA
   UNIV JAMBI, INDONESIA
   FISHERIES ACAD SORONG, INDONESIA
   INDONESIAN INST SCI, INDONESIA
   UNIV NATL TAIWAN NTU, TAIWAN
   MNHN, FRANCE
   IRD, FRANCE
   LIPI, INDONESIA
   UNIV GUELPH, CANADA
   UNIV GUELPH, CANADA
UM MARBEC
   ENTROPIE
IN WOS Cotutelle UMR
   DOAJ
   copubli-france
   copubli-europe
   copubli-int-hors-europe
   copubli-sud
IF 5.183
TC 23
UR https://archimer.ifremer.fr/doc/00606/71810/70300.pdf
   https://archimer.ifremer.fr/doc/00606/71810/70301.pdf
   https://archimer.ifremer.fr/doc/00606/71810/70302.xlsx
   https://archimer.ifremer.fr/doc/00606/71810/70303.xlsx
   https://archimer.ifremer.fr/doc/00606/71810/70304.xlsx
   https://archimer.ifremer.fr/doc/00606/71810/70305.xlsx
LA English
DT Article
DE ;Coral Triangle;cryptic diversity;DNA barcoding;reference library;taxonomic gap
AB DNA barcoding opens new perspectives on the way we document biodiversity. Initially proposed to circumvent the limits of morphological characters to assign unknown individuals to known species, DNA barcoding has been used in a wide array of studies where collecting species identity constitutes a crucial step. The assignment of unknowns to knowns assumes that species are already well identified and delineated, making the assignment performed reliable. Here, we used DNA‐based species delimitation and specimen assignment methods iteratively to tackle the inventory of the Indo‐Australian Archipelago grey mullets, a notorious case of taxonomic complexity that requires DNA‐based identification methods considering that traditional morphological identifications are usually not repeatable and sequences mislabeling are common in international sequence repositories. We first revisited a DNA barcode reference library available at the global scale for Mugilidae through different DNA‐based species delimitation methods to produce a robust consensus scheme of species delineation. We then used this curated library to assign unknown specimens collected throughout the Indo‐Australian Archipelago to known species. A second iteration of OTUs delimitation and specimen assignment was then performed. We show the benefits of using species delimitation and specimen assignment methods iteratively to improve the accuracy of specimen identification and propose a workflow to do so. 
PY 2020
PD JUN
SO Evolutionary Applications
SN 1752-4571
PU Wiley
VL 13
IS 6
UT 000512462700001
BP 1451
EP 1467
DI 10.1111/eva.12926
ID 71810
ER

EF