FN Archimer Export Format PT J TI Novel opportunities for NGS-based one health surveillance of foodborne viruses BT AF Desdouits, Marion de Graaf, Miranda Strubbia, Sofia Oude Munnink, Bas B. Kroneman, Annelies LE GUYADER, Soizick Koopmans, Marion P. G. AS 1:1;2:2;3:1;4:2;5:3;6:1;7:2; FF 1:PDG-RBE-SGMM-LSEM;2:;3:PDG-RBE-SGMM-LSEM;4:;5:;6:PDG-RBE-SGMM-LSEM;7:; C1 IFREMER, Laboratoire de Microbiologie, LSEM/SG2M, Nantes, France Viroscience Department, Erasmus Medical Centre, Molewaterplein 40, 3015, GD, Rotterdam, The Netherlands Centre for Infectious Disease Control, National Institute of Public Health and the Environment, Bilthoven, The Netherlands C2 IFREMER, FRANCE ERASMUS MC, NETHERLANDS RIVM, NETHERLANDS SI NANTES SE PDG-RBE-SGMM-LSEM IN WOS Ifremer UPR DOAJ copubli-europe TC 15 UR https://archimer.ifremer.fr/doc/00641/75330/75988.pdf LA English DT Article DE ;Next-generation sequencing;Metagenomics;Foodborne virus;Food virology;Human enteric virus;Norovirus AB Foodborne viral infections rank among the top 5 causes of disease, with noroviruses and hepatitis A causing the greatest burden globally. Contamination of foods by infected food handlers or through environmental pollution are the main sources of foodborne illness, with a lesser role for consumption of products from infected animals. Viral partial genomic sequencing has been used for more than two decades to track foodborne outbreaks and whole genome or metagenomics next-generation-sequencing (NGS) are new additions to the toolbox of food microbiology laboratories. We discuss developments in the field of targeted and metagenomic NGS, with an emphasis on application in food virology, the challenges and possible solutions towards future routine application PY 2020 PD JUL SO One Health Outlook SN 2524-4655 PU Springer Science and Business Media LLC VL 2 IS 1 UT 000710547700001 DI 10.1186/s42522-020-00015-6 ID 75330 ER EF