FN Archimer Export Format
PT J
TI Transcriptomic dataset for Sardina pilchardus: Assembly, annotation, and expression of nine tissues
BT 
AF Langa, Jorge
   Huret, Martin
   Montes, Iratxe
   Conklin, Darrell
   Estonba, Andone
AS 1:1;2:2;3:1;4:3,4;5:1;
FF 1:;2:PDG-RBE-STH-LBH;3:;4:;5:;
C1 Department of Genetics, Physical Anthropology and Animal Physiology, Faculty of Science and Technology, University of the Basque Country, UPV/EHU, Leioa, Bizkaia 48940, Spain
   IFREMER, STH/LBH, B.P. 70, Plouzané 29280, France
   Department of Computer Science and Artificial Intelligence, Faculty of Computer Science, University of the Basque Country UPV/EHU, San Sebastián, Spain
   IKERBASQUE, Basque Foundation for Science, Bilbao, Spain
C2 UNIV PAIS VASCO EHU, SPAIN
   IFREMER, FRANCE
   UNIV PAIS VASCO EHU, SPAIN
   IKERBASQUE, SPAIN
SI BREST
SE PDG-RBE-STH-LBH
IN WOS Ifremer UPR
   DOAJ
   copubli-europe
TC 1
UR https://archimer.ifremer.fr/doc/00734/84652/89742.pdf
LA English
DT Article
CR EVHOE 2015
   EVHOE EVALUATION HALIEUTIQUE OUEST DE L'EUROPE
BO Thalassa
DE ;Sardina pilchardus;European sardine;Transcriptome assembly;Annotation;Expression;Tissue quantification;Pathway;Gene ontology
AB European sardine or pilchard is a planktonic small pelagic fish present from the North Sea in Europe to the coast of Senegal in the North of Africa, and across the Mediterranean sea to the Black Sea. Ecologically, sardines are an intermediary link in the trophic network, preying on plankton and being predated by larger fishes, marine mammals, and seabirds. This species is of great nutritional and economic value as a cheap but rich source of protein and fat. It is either consumed directly by humans or fed as fishmeal for aquaculture and farm animals. Despite its importance in the food basket, little is known about the molecular mechanisms involved in protein and lipid synthesis in this species. We collected nine tissues of Sardina pilchardus and reconstructed the transcriptome. In all, 198,597 transcripts were obtained, from which 68,031 are protein-coding. Quality assessment of the transcriptome was performed by back-mapping reads to the transcriptome and by searching for Single Copy Orthologs. Additionally, Gene Ontology and KEGG annotations were retrieved for most of the protein-coding genes. Finally, each library was quantified in terms of Transcripts per Million to disclose their expression patterns. 
PY 2021
PD DEC
SO Data In Brief
SN 2352-3409
PU Elsevier BV
VL 39
UT 000725561900009
DI 10.1016/j.dib.2021.107583
ID 84652
ER

EF