FN Archimer Export Format
PT J
TI The Ocean barcode atlas: A web service to explore the biodiversity and biogeography of marine organisms
BT 
AF VERNETTE, Caroline
   HENRY, Nicolas
   LECUBIN, Julien
   DE VARGAS, Colomban
   HINGAMP, Pascal
   LESCOT, Magali
AS 1:1,2;2:2,3;3:4;4:2,3;5:1,2;6:1,2;
FF 1:;2:;3:;4:;5:;6:;
C1 Aix Marseille Université, Université de Toulon, IRD, CNRS, Mediterranean Institute of Oceanography (MIO) UM 110, Marseille, France
   Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, Paris, France
   Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M ECOMAP, UMR 7144, Roscoff, France
   SIP, OSU PYTHEAS, Marseille, France
C2 UNIV AIX MARSEILLE, FRANCE
   TARA OCEANS GOSEE, FRANCE
   UNIV SORBONNE, FRANCE
   UNIV AIX MARSEILLE, FRANCE
SI TOULON
SE CNRS
IF 8.678
TC 13
UR https://archimer.ifremer.fr/doc/00761/87337/92862.pdf
LA English
DT Article
CR MOOSE-GE
   MOOSE-GE 2010
BO Téthys II
DE ;biogeography;diversity;marine ecology;metabarcoding;metadata;plankton
AB The Ocean Barcode Atlas (OBA) is a user friendly web service designed for biologists who wish to explore the biodiversity and biogeography of marine organisms locked in otherwise difficult to mine planetary scale DNA metabarcode data sets. Using just a web browser, a comprehensive picture of the diversity of a taxon or a barcode sequence is visualized graphically on world maps and interactive charts. Interactive results panels allow dynamic threshold adjustments and the display of diversity results in their environmental context measured at the time of sampling (temperature, oxygen, latitude, etc). Ecological analyses such as alpha and beta-diversity plots are produced via publication quality vector graphics representations. Currently, the Ocean Barcode Altas is deployed online with the (i) Tara Oceans eukaryotic 18S-V9 rDNA metabarcodes; (ii) Tara Oceans 16S/18S rRNA miTags; and (iii) 16S-V4 V5 metabarcodes collected during the Malaspina-2010 expedition. Additional prokaryotic or eukaryotic plankton barcode data sets will be added upon availability, given they provide the required complement of barcodes (including raw reads to compute barcode abundance) associated with their contextual environmental variables. Ocean Barcode Atlas is a freely-available web service at: http://oba.mio.osupytheas.fr/ocean-atlas/. 
PY 2021
PD MAY
SO Molecular Ecology Resources
SN 1755-098X
PU Wiley
VL 21
IS 4
UT 000616663100001
BP 1347
EP 1358
DI 10.1111/1755-0998.13322
ID 87337
ER

EF