FN Archimer Export Format
PT J
TI SITVITBovis-a publicly available database and mapping tool to get an improved overview of animal and human cases caused by Mycobacterium bovis
BT 
AF COUVIN, David
   CERVERA-MARZAL, Inaki
   DAVID, Audrey
   REYNAUD, Yann
   RASTOGI, Nalin
AS 1:1;2:1;3:1;4:1;5:1;
FF 1:;2:;3:;4:;5:;
C1 Inst Pasteur Guadeloupe, WHO Supranatl TB Reference Lab, TB & Mycobacteria Unit, F-97183 Abymes, Guadeloupe, France.
C2 INST PASTEUR GUADELOUPE, FRANCE
IN DOAJ
IF 5.8
TC 2
UR https://archimer.ifremer.fr/doc/00771/88273/93841.pdf
   https://archimer.ifremer.fr/doc/00771/88273/93842.zip
LA English
DT Article
AB Limited data are available for bovine tuberculosis and the infections it can cause in humans and other mammals. We therefore constructed a publicly accessible SITVITBovis database that incorporates genotyping and epidemiological data on Mycobacterium bovis. It also includes limited data on Mycobacterium caprae (previously synonymous with the name M. bovis subsp. Caprae) that can infect both animals and humans. SITVITBovis incorporates data on 25,741 isolates corresponding to 60 countries of origin (75 countries of isolation). It reports a total of 1000 spoligotype patterns: 537 spoligotype international types (SITs, containing 25 278 clinical isolates) and 463 orphan patterns, allowing a wide overview of the geographic distribution of various phylogenetical sublineages (BOV_1, BOV_2, BOV_3 and BOV_4-CAPRAE). The SIT identifiers of the SITVITBovis were compared to the SB numbers of the Mbovis.org database to facilitate crosscheck among databases. Note that SITVITBovis also contains limited information on mycobacterial interspersed repetitive units-variable number of tandem repeats when available. Significant differences were observed when comparing age/gender of human isolates as well as various hosts. The database includes information on the regions where a strain was isolated as well as hosts involved, making it possible to see geographic trends. SITVITBovis is publicly accessible at: http://www.pasteur-guadeloupe.fr:8081/SITVIT_Bovis. Finally, a future second version is currently in progress to allow query of associated whole-genome sequencing data. 
PY 2022
PD JAN
SO Database-the Journal Of Biological Databases And Curation
SN 1758-0463
PU Oxford Univ Press
VL 2022
IS 2022
UT 000767723700001
DI 10.1093/database/baab081
ID 88273
ER

EF