FN Archimer Export Format
PT J
TI Species and population genomic differentiation in Pocillopora corals (Cnidaria, Hexacorallia)
BT 
AF Aurelle, Didier
   Pratlong, Marine
   Oury, Nicolas
   Haguenauer, Anne
   Gélin, Pauline
   Magalon, Hélène
   Adjeroud, Mehdi
   Romans, Pascal
   Vidal-Dupiol, Jeremie
   Claereboudt, Michel
   Reynes, Lauric
   Toulza, Eve
   Bonhomme, François
   Mitta, Guillaume
   Pontarotti, Pierre
AS 1:1,2,3,14;2:1,4,15;3:5;4:2,6;5:5;6:5;7:5,6;8:7;9:8;10:9;11:1;12:16;13:10;14:11,16;15:12,13;
FF 1:;2:;3:;4:;5:;6:;7:;8:;9:PDG-RBE-IHPE;10:;11:;12:;13:;14:PDG-RBE-RMPF;15:;
C1 Aix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France
   Aix Marseille Univ, Avignon Université, CNRS, IRD, IMBE, Marseille, France
   Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, EPHE, 57 rue Cuvier, 75005, Paris, France
   Aix Marseille Univ, CNRS, Centrale Marseille, I2M, Marseille, France
   UMR ENTROPIE (Université de La Réunion, IRD, IFREMER, Université de Nouvelle-Calédonie, CNRS), Université de La Réunion, Saint-Denis La Réunion, France
   PSL Université Paris, USR CRIOBE—EPHE-UPVD-CNRS, 3278, Perpignan, France
   Centre de Ressources Biologiques Marines, Sorbonne Universités, UPMC Univ Paris 06, Observatoire Océanologique, UMS 2348, Banyuls/Mer, France
   IHPE, Univ. Montpellier, CNRS, Ifremer, Univ. Perpignan Via Domitia, Montpellier France, Montpellier, France
   Department of Marine Science and Fisheries, College of Agricultural and Marine Sciences, Sultan Qaboos University, Al-Khod, 123, Muscat, Sultanate of Oman
   ISEM, Univ Montpellier, CNRS, IRD, EPHE, 34000, Montpellier, France
   EIO, Univ Polynesie Francaise, ILM, IRD, Ifremer, 98719, Tahiti, French Polynesia, France
   Aix Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, 19–21 Boulevard Jean Moulin, 13005, Marseille, France
   SNC5039 CNRS, 19–21 Boulevard Jean Moulin, 13005, Marseille, France
   Campus de Luminy—Oceanomed, 13288, Marseille cedex 09, France
   Equipe Evolution Biologique et Modélisation, Marseille, France
   IHPE, Univ. Montpellier, CNRS, Ifremer, Univ. Perpignan Via Domitia, Perpignan, France
C2 UNIV AIX MARSEILLE, FRANCE
   UNIV AIX MARSEILLE, FRANCE
   MNHN, FRANCE
   UNIV AIX MARSEILLE, FRANCE
   UNIV LA REUNION, FRANCE
   UNIV PARIS, FRANCE
   UNIV SORBONNE, FRANCE
   IFREMER, FRANCE
   UNIV SULTAN QABOOS, OMAN
   UNIV MONTPELLIER, FRANCE
   IFREMER, FRANCE
   UNIV AIX MARSEILLE, FRANCE
   CNRS, FRANCE
   UNIV AIX MARSEILLE, FRANCE
   UNIV AIX MARSEILLE, FRANCE
   UNIV PERPIGNAN, FRANCE
SI MONTPELLIER
   TAHITI
SE PDG-RBE-IHPE
   PDG-RBE-RMPF
UM IHPE
   EIO
   ENTROPIE
IN WOS Ifremer UMR
   WOS Cotutelle UMR
   copubli-france
   copubli-univ-france
   copubli-int-hors-europe
IF 1.5
TC 1
UR https://archimer.ifremer.fr/doc/00792/90426/96012.pdf
LA English
DT Article
DE ;Coral;Species delineation;RAD-sequencing;Pocillopora;Genetic structure;Clonal reproduction
AB Correctly delimiting species and populations is a prerequisite for studies of connectivity, adaptation and conservation. Genomic data are particularly useful to test species differentiation for organisms with few informative morphological characters or low discrimination of cytoplasmic markers, as in Scleractinians. Here we applied Restriction site Associated DNA sequencing (RAD-sequencing) to the study of species differentiation and genetic structure in populations of Pocillopora spp. from Oman and French Polynesia, with the objectives to test species hypotheses, and to study the genetic structure among sampling sites within species. We focused here on coral colonies morphologically similar to P. acuta (damicornis type β). We tested the impact of different filtering strategies on the stability of the results. The main genetic differentiation was observed between samples from Oman and French Polynesia. These samples corresponded to different previously defined primary species hypotheses (PSH), i.e., PSHs 12 and 13 in Oman, and PSH 5 in French Polynesia. In Oman, we did not observe any clear differentiation between the two putative species PSH 12 and 13, nor between sampling sites. In French Polynesia, where a single species hypothesis was studied, there was no differentiation between sites. Our analyses allowed the identification of clonal lineages in Oman and French Polynesia. The impact of clonality on genetic diversity is discussed in light of individual-based simulations. 
PY 2022
PD OCT
SO Genetica
SN 0016-6707
PU Springer Science and Business Media LLC
VL 150
IS 5
UT 000852097900001
BP 247
EP 262
DI 10.1007/s10709-022-00165-7
ID 90426
ER

EF