FN Archimer Export Format PT J TI Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation BT AF Voolstra, Christian R. Hume, Benjamin C. C. Armstrong, Eric J. Mitushasi, Guinther Porro, Barbara Oury, Nicolas Agostini, Sylvain Boissin, Emilie Poulain, Julie Carradec, Quentin Paz-García, David A. Zoccola, Didier Magalon, Hélène Moulin, Clémentine Bourdin, Guillaume Iwankow, Guillaume Romac, Sarah Banaigs, Bernard Boss, Emmanuel Bowler, Chris de Vargas, Colomban Douville, Eric Flores, Michel Furla, Paola Galand, Pierre E. Gilson, Eric Lombard, Fabien Pesant, Stéphane Reynaud, Stéphanie Sullivan, Matthew B. Sunagawa, Shinichi Thomas, Olivier P. Troublé, Romain Vega Thurber, Rebecca Wincker, Patrick Planes, Serge Allemand, Denis Forcioli, Didier AS 1:1;2:1;3:2;4:3;5:4,5,6;6:7;7:3;8:8;9:9,10;10:9,10;11:11;12:5,12;13:7;14:13;15:14;16:8;17:10,15;18:8;19:14;20:10,16;21:10,15;22:17;23:18;24:4,5;25:19;26:4,5,20;27:10,21,22;28:23;29:5,12;30:24;31:25;32:26;33:13;34:27;35:9,10;36:8;37:5,12;38:4,5; FF 1:;2:;3:;4:;5:;6:;7:;8:;9:;10:;11:;12:;13:;14:;15:;16:;17:;18:;19:;20:;21:;22:;23:;24:;25:;26:;27:;28:;29:;30:;31:;32:;33:;34:;35:;36:;37:;38:; C1 Department of Biology, University of Konstanz, 78457, Konstanz, Germany PSL Research University, EPHE, CNRS, Université de Perpignan, Perpignan, France Shimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka, Japan Université Côte d’Azur, CNRS, INSERM, Institute for Research on Cancer and Aging, Nice (IRCAN), Nice, France LIA ROPSE, Laboratoire International Associé Université Côte d’Azur—Centre Scientifique de Monaco, Monaco, Principality of Monaco French National Institute for Agriculture, Food, and Environment (INRAE), Université Côte d’Azur, ISA, France UMR 250/9220 ENTROPIE UR-IRD-CNRS-Ifremer-UNC, Laboratoire d’Excellence CORAIL, Université de la Réunion, St Denis de la Réunion, France PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d’Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, France Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara GOSEE, 3 rue Michel-Ange, 75016, Paris, France Centro de Investigaciones Biológicas del Noroeste (CIBNOR), Av. IPN 195, Col. Playa Palo de Santa Rita Sur, La Paz, 23096, Baja California Sur, México Centre Scientifique de Monaco, 8 Quai Antoine Ier, MC-98000, Monaco, Principality of Monaco Fondation Tara Océan, Base Tara, 8 rue de Prague, 75 012, Paris, France School of Marine Sciences, University of Maine, Orono, 04469, ME, USA Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP, Roscoff, France Institut de Biologie de l’Ecole Normale Supérieure, Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France Laboratoire des Sciences du Climat et de l’Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, Gif-sur-Yvette, France Weizmann Institute of Science, Department of Earth and Planetary Sciences, 76100, Rehovot, Israel Sorbonne Université, CNRS, Laboratoire d’Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, Banyuls-sur-Mer, France Department of Medical Genetics, CHU Nice, Nice, France Laboratoire d’Océanographie de Villefranche, UMR 7093, Sorbonne Université, CNRS, 06230, Villefranche sur mer, France Institut Universitaire de France, 75231, Paris, France European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK Department of Microbiology and Department of Civil, Environmental and Geodetic Engineering, The Ohio State University, Columbus, OH, USA Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zurich, Switzerland School of Biological and Chemical Sciences, Ryan Institute, University of Galway, University Road, H91 TK33, Galway, Ireland Department of Microbiology, Oregon State University, Corvallis, OR, USA C2 UNIV KONSTANZ, GERMANY UNIV PERPIGNAN, FRANCE UNIV TSUKUBA, JAPAN UNIV COTE D’AZUR, FRANCE CENTRE SCIENT MONACO, MONACO INRAE, FRANCE UNIV LA REUNION, FRANCE UNIV PERPIGNAN, FRANCE UNIV PARIS SACLAY, FRANCE TARA OCEANS GOSEE, FRANCE CIBNOR, MÉXICO CENTRE SCIENT MONACO, MONACO TARA OCEAN FDN, FRANCE UNIV MAINE, USA UNIV SORBONNE, FRANCE ENS, FRANCE UNIV PARIS SACLAY, FRANCE WEIZMANN INST SCI, ISRAEL UNIV SORBONNE, FRANCE CHU NICE, FRANCE UNIV SORBONNE, FRANCE INST UNIV FRANCE, FRANCE EMBL EBI, UK UNIV OHIO STATE, USA ETH ZURICH, SWITZERLAND UNIV GALWAY, IRELAND UNIV OREGON STATE, USA UM ENTROPIE TC 0 UR https://archimer.ifremer.fr/doc/00846/95775/103602.pdf https://archimer.ifremer.fr/doc/00846/95775/103603.pdf LA English DT Article DE ;Conservation biology;Ecological genetics;Evolutionary genetics;Genetic variation;Population genetics AB Tropical coral reefs are among the most affected ecosystems by climate change and face increasing loss in the coming decades. Effective conservation strategies that maximize ecosystem resilience must be informed by the accurate characterization of extant genetic diversity and population structure together with an understanding of the adaptive potential of keystone species. Here we analyzed samples from the Tara Pacific Expedition (2016–2018) that completed an 18,000 km longitudinal transect of the Pacific Ocean sampling three widespread corals—Pocillopora meandrina, Porites lobata, and Millepora cf. platyphylla—across 33 sites from 11 islands. Using deep metagenomic sequencing of 269 colonies in conjunction with morphological analyses and climate variability data, we can show that despite a targeted sampling the transect encompasses multiple cryptic species. These species exhibit disparate biogeographic patterns and, most importantly, distinct evolutionary patterns in identical environmental regimes. Our findings demonstrate on a basin scale that evolutionary trajectories are species-specific and can only in part be predicted from the environment. This highlights that conservation strategies must integrate multi-species investigations to discern the distinct genomic footprints shaped by selection as well as the genetic potential for adaptive change. PY 2023 PD JUN SO npj Biodiversity SN 2731-4243 PU Springer Science and Business Media LLC VL 2 IS 1 DI 10.1038/s44185-023-00020-8 ID 95775 ER EF