FN Archimer Export Format PT J TI Machine learning in marine ecology: an overview of techniques and applications BT AF Rubbens, Peter Brodie, Stephanie Cordier, Tristan Destro Barcellos, Diogo Devos, Paul Fernandes-Salvador, Jose A Fincham, Jennifer I Gomes, Alessandra Handegard, Nils Olav Howell, Kerry Jamet, Cédric Kartveit, Kyrre Heldal Moustahfid, Hassan Parcerisas, Clea Politikos, Dimitris Sauzède, Raphaëlle Sokolova, Maria Uusitalo, Laura Van den Bulcke, Laure van Helmond, Aloysius T M Watson, Jordan T Welch, Heather Beltran-Perez, Oscar Chaffron, Samuel Greenberg, David S Kühn, Bernhard Kiko, Rainer Lo, Madiop Lopes, Rubens M Möller, Klas Ove Michaels, William Pala, Ahmet Romagnan, Jean-Baptiste Schuchert, Pia Seydi, Vahid Villasante, Sebastian Malde, Ketil Irisson, Jean-Olivier AS 1:1,2;2:3;3:4,5;4:6;5:7;6:8;7:9;8:6;9:10;10:11;11:12;12:10;13:13;14:1,7;15:14;16:15;17:16;18:17,18;19:19,20;20:21;21:22;22:3;23:23;24:24,25;25:26;26:27;27:28,29;28:30;29:6;30:31;31:32;32:10,33;33:34;34:35;35:36;36:37;37:10,38;38:28; FF 1:;2:;3:;4:;5:;6:;7:;8:;9:;10:;11:;12:;13:;14:;15:;16:;17:;18:;19:;20:;21:;22:;23:;24:;25:;26:;27:;28:;29:;30:;31:;32:;33:PDG-RBE-HALGO-EMH;34:;35:;36:;37:;38:; C1 Flanders Marine Institute (VLIZ) , 8400 Oostende , Belgium Kytos BV , Technologiepark-Zwijnaarde 82, 9052 Gent, Belgium Institute of Marine Science, University of California Santa Cruz , Santa Cruz, CA 95064 , USA Department of Genetics and Evolution, University of Geneva , 1205 Geneva , Switzerland NORCE Climate, NORCE Norwegian Research Centre AS, Bjerknes Centre for Climate Research , Jahnebakken 5, 5007 Bergen , Norway Oceanographic Institute, University of São Paulo , Praça do Oceanográfico, 191, 05508-120, São Paulo , Brazil Department of Information Technology, Research group WAVES, Ghent University , Tech Lane Ghent Science Park, 126, B-9058 Gent , Belgium AZTI, Marine Research, Basque Research and Technology Alliance (BRTA). Txatxarramendi Ugartea z/g , 48395 Sukarrieta , Spain Cefas , Pakefield Road, Lowestoft, Suffolk NR33 0HT , UK Institute of Marine Research , Nykirkekaien 1, 5005 Bergen , Norway School of Biological and Marine Sciences, University of Plymouth , Drake Circus, Plymouth PL4 8AA , UK Université du Littoral Côte d'Opale, CNRS, Univ. Lille, IRD, UMR 8187, LOG, Laboratoire d'Océanologie et de Géosciences , F-62930 Wimereux , France National Oceanic and Atmospheric Administration, US Integrated Ocean Observing System , Silver Spring, MD 20910 , USA Institute of Marine Biological Resources and Inland, Hellenic Centre for Marine Research , 16452 Argyroupoli , Greece Sorbonne Université, CNRS, Institut de la Mer de Villefranche, FR3761 , F-06230 Villefranche-Sur-Mer , France Wageningen University and Research , Droevendaalsesteeg 1, Building 107, 6708 PB Wageningen , The Netherlands Finnish Environment Institute , Latokartanonkaari 11, FI-00790 Helsinki , Finland Natural Resources Institute Finland (Luke) , Latokartanonkaari 9, FI-00790 Helsinki , Finland Flanders Research Institute for Agriculture, Fisheries and Food, Marine Research , Jacobsenstraat 1, 8400 Ostend , Belgium Department of Data Analysis and Mathematical Modelling—Knowledge-based Systems Research Group, University of Ghent , Coupure Links 653, 9000 Gent , Belgium Wageningen University and Research, Wageningen Marine Research , 1976 CP IJmuiden , The Netherlands Auke Bay Laboratory, National Oceanic and Atmospheric Administration , 17609 Pt. Lena Loop Rd., Juneau, AK 99801 , USA Leibniz Institute for Baltic Sea Research Warnemünde (IOW) , Seestrasse 15, 18119 Rostock , Germany Nantes Université, École Centrale Nantes, CNRS, LS2N, UMR 6004 , F-44000 Nantes , France Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE , F-75016 Paris , France Institute of Coastal Systems, Helmholtz-Zentrum Hereon , Max-Planck-Straße 1, 21502 Geesthacht , Germany Johann Heinrich von Thünen Institute of Sea Fisheries , Herwigstraße 31, 27572 Bremerhaven , Germany Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche, LOV , F-06230 Villefranche-sur-Mer , France GEOMAR Helmholtz Centre for Ocean Research Kiel , 24148 Kiel , Germany Aix Marseille Univ., Univ. Toulon, CNRS, IRD, Mediterranean Institute of Oceanography , F-13009 Marseille , France Institute of Carbon Cycles, Helmholtz-Zentrum Hereon , Max-Planck-Straße 1, 21502 Geesthacht , Germany NOAA, National Marine Fisheries Service, Office of Science and Technology , Silver Spring, MD 20910 , USA Department of Mathematics, University of Bergen , Allégaten 41, 5007 Bergen , Norway DECOD (Ecosystem Dynamics and Sustainability), IFREMER, INRAe, Institut-Agro-Agrocampus Ouest, rue de L'île d'Yeu , 44311 Nantes Cedex 3 , France Agri-Food & Biosciences Institute (AFBI), Environment and Marine Sciences Division , 18a Newforge Lane, Belfast BT9 5PX , UK Centre for Applied Marine Science, Bangor University , Menai Bridge LL59 5AB , UK EqualSea Lab-Cross-Research in Environmental Technologies (CRETUS), Department of Applied Economics, University of Santiago de Compostela , Santiago de Compostela 15782 , Spain Department of Informatics, University of Bergen , Allégaten 41, 5007 Bergen , Norway C2 FLANDERS MARINE INSTITUTE (VLIZ), BELGIUM KYTOS BV, BELGIUM UNIV CALIF SANTA CRUZ, USA UNIV GENEVA, SWITZERLAND NORCE, NORWAY UNIV SAO PAULO, BRAZIL UNIV GHENT, BELGIUM AZTI, SPAIN CEFAS, UK IMR (BERGEN), NORWAY UNIV PLYMOUTH, UK UNIV LITTORAL COTE D'OPALE, FRANCE NOAA, USA HELLENIC CTR MARINE RES, GREECE UNIV SORBONNE, FRANCE UNIV WAGENINGEN, NETHERLANDS FINNISH ENVIRONM INST SYKE, FINLAND LUKE, FINLAND ILVO, BELGIUM UNIV GHENT, BELGIUM UNIV WAGENINGEN, NETHERLANDS NOAA, USA LEIBNIZ INST BALT SEA RES (IOW), GERMANY UNIV NANTES, FRANCE TARA OCEANS GOSEE, FRANCE HZG, GERMANY THUNEN INST SEA FISHERIES, GERMANY UNIV SORBONNE, FRANCE IFM GEOMAR, GERMANY UNIV AIX MARSEILLE, FRANCE HZG, GERMANY NOAA, USA UNIV BERGEN, NORWAY IFREMER, FRANCE AFBI, UK UNIV BANGOR, UK UNIV SANTIAGO DE COMPOSTELA, SPAIN UNIV BERGEN, NORWAY SI NANTES SE PDG-RBE-HALGO-EMH UM DECOD IN WOS Ifremer UMR DOAJ copubli-france copubli-europe copubli-univ-france copubli-int-hors-europe copubli-sud IF 3.3 TC 5 UR https://archimer.ifremer.fr/doc/00850/96150/104335.pdf https://archimer.ifremer.fr/doc/00850/96150/104336.zip LA English DT Article DE ;acoustics;ecology;image;machine learning;omics;profiles;remote sensing;review AB Machine learning covers a large set of algorithms that can be trained to identify patterns in data. Thanks to the increase in the amount of data and computing power available, it has become pervasive across scientific disciplines. We first highlight why machine learning is needed in marine ecology. Then we provide a quick primer on machine learning techniques and vocabulary. We built a database of ∼1000 publications that implement such techniques to analyse marine ecology data. For various data types (images, optical spectra, acoustics, omics, geolocations, biogeochemical profiles, and satellite imagery), we present a historical perspective on applications that proved influential, can serve as templates for new work, or represent the diversity of approaches. Then, we illustrate how machine learning can be used to better understand ecological systems, by combining various sources of marine data. Through this coverage of the literature, we demonstrate an increase in the proportion of marine ecology studies that use machine learning, the pervasiveness of images as a data source, the dominance of machine learning for classification-type problems, and a shift towards deep learning for all data types. This overview is meant to guide researchers who wish to apply machine learning methods to their marine datasets. PY 2023 PD SEP SO Ices Journal Of Marine Science SN 1054-3139 PU Oxford University Press (OUP) VL 80 IS 7 UT 001041998200001 BP 1829 EP 1853 DI 10.1093/icesjms/fsad100 ID 96150 ER EF