FN Archimer Export Format PT J TI Mobile elements create strain‐level variation in the services conferred by an aphid symbiont BT AF Patel, Vilas Lynn‐Bell, Nicole Chevignon, Germain Kucuk, Roy A. Higashi, Clesson H. V. Carpenter, Melissa Russell, Jacob A. Oliver, Kerry M. AS 1:1;2:1;3:2;4:1;5:3;6:4;7:3;8:1; FF 1:;2:;3:PDG-RBE-ASIM;4:;5:;6:;7:;8:; C1 Department of Entomology University of Georgia Athens Georgia, USA Laboratoire de Génétique et Pathologie des Mollusques Marins, IFREMER, La Tremblade, France Department of Biology Drexel University Philadelphia Pennsylvania ,USA Department of Biodiversity, Earth, and Environmental Science Drexel University Philadelphia ,Pennsylvania ,USA C2 UNIV GEORGIA, USA IFREMER, FRANCE UNIV PHILADELPHIA, USA UNIV PHILADELPHIA, USA SI LA TREMBLADE SE PDG-RBE-ASIM IN WOS Ifremer UPR copubli-int-hors-europe IF 5.1 TC 1 UR https://archimer.ifremer.fr/doc/00857/96919/105572.pdf https://archimer.ifremer.fr/doc/00857/96919/105573.docx LA English DT Article AB Heritable, facultative symbionts are common in arthropods, often functioning in host defence. Despite moderately reduced genomes, facultative symbionts retain evolutionary potential through mobile genetic elements (MGEs). MGEs form the primary basis of strain‐level variation in genome content and architecture, and often correlate with variability in symbiont‐mediated phenotypes. In pea aphids (Acyrthosiphon pisum), strain‐level variation in the type of toxin‐encoding bacteriophages (APSEs) carried by the bacterium Hamiltonella defensa correlates with strength of defence against parasitoids. However, co‐inheritance creates difficulties for partitioning their relative contributions to aphid defence. Here we identified isolates of H. defensa that were nearly identical except for APSE type. When holding H. defensa genotype constant, protection levels corresponded to APSE virulence module type. Results further indicated that APSEs move repeatedly within some H. defensa clades providing a mechanism for rapid evolution in anti‐parasitoid defences. Strain variation in H. defensa also correlates with the presence of a second symbiont Fukatsuia symbiotica. Predictions that nutritional interactions structured this coinfection were not supported by comparative genomics, but bacteriocin‐containing plasmids unique to co‐infecting strains may contribute to their common pairing. In conclusion, strain diversity, and joint capacities for horizontal transfer of MGEs and symbionts, are emergent players in the rapid evolution of arthropods. PY 2023 PD DEC SO Environmental Microbiology SN 1462-2912 PU Wiley VL 25 IS 12 UT 001087096000001 BP 3333 EP 3348 DI 10.1111/1462-2920.16520 ID 96919 ER EF