DNA hybridization mechanism in an interfacial environment: What hides beneath first order k (s(-1)) kinetic constant?

The scientific question addressed in this work is: what hides beneath first order kinetic constant k (s(-1)) measured for hybridization of a DNA target on a biosensor surface. Kinetics hybridization curves were established with a 27 MHz quartz microbalance (9 MHz, third harmonic) biosensor, constituted of a 20-base probe monolayer deposited on a gold covered quartz surface. Kinetics analysis, by a known two-step adsorption-hybridization mechanism, is well appropriate to fit properly hybridization kinetics curves, for complementary 20-base to 40-base targets over two concentration decades. It was found that the K-1 (M-1) adsorption constant, relevant to the first step, concerns an equilibrium between non hybridized targets and hybridized pre-complex and increases with DNA target length. It was established that k(2) (s(-1)), relevant to irreversible formation of a stable duplex, varies in an opposite way to K-1 with DNA target length. (C) 2012 Published by Elsevier B.V.

Keyword(s)

Biosensors, DNA, Hybridization kinetics, Quartz crystal microbalance

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Lazerges M., Perrot H., Rabehagasoa N., Compere Chantal, Dreanno Catherine, Mucio Pedroso M., Faria R. C., Bueno P. R. (2012). DNA hybridization mechanism in an interfacial environment: What hides beneath first order k (s(-1)) kinetic constant?. Sensors And Actuators B-chemical. 171. 522-527. https://doi.org/10.1016/j.snb.2012.05.023, https://archimer.ifremer.fr/doc/00101/21195/

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