DNA hybridization mechanism in an interfacial environment: What hides beneath first order k (s(-1)) kinetic constant?
The scientific question addressed in this work is: what hides beneath first order kinetic constant k (s(-1)) measured for hybridization of a DNA target on a biosensor surface. Kinetics hybridization curves were established with a 27 MHz quartz microbalance (9 MHz, third harmonic) biosensor, constituted of a 20-base probe monolayer deposited on a gold covered quartz surface. Kinetics analysis, by a known two-step adsorption-hybridization mechanism, is well appropriate to fit properly hybridization kinetics curves, for complementary 20-base to 40-base targets over two concentration decades. It was found that the K-1 (M-1) adsorption constant, relevant to the first step, concerns an equilibrium between non hybridized targets and hybridized pre-complex and increases with DNA target length. It was established that k(2) (s(-1)), relevant to irreversible formation of a stable duplex, varies in an opposite way to K-1 with DNA target length. (C) 2012 Published by Elsevier B.V.
Lazerges M., Perrot H., Rabehagasoa N., Compere Chantal, Dreanno Catherine, Mucio Pedroso M., Faria R. C., Bueno P. R. (2012). DNA hybridization mechanism in an interfacial environment: What hides beneath first order k (s(-1)) kinetic constant?. Sensors And Actuators B-chemical. 171. 522-527. https://doi.org/10.1016/j.snb.2012.05.023, https://archimer.ifremer.fr/doc/00101/21195/