The ocean sampling day consortium

Type Article
Date 2015-06
Language English
Author(s) Kopf Anna1, 2, Bicak Mesude3, Kottmann Renzo1, Schnetzer Julia1, 2, Kostadinov IvayloORCID2, Lehmann Katja4, Fernandez-Guerra Antonio1, 3, Jeanthon Christian5, 6, Rahav Eyal7, Ullrich Matthias2, Wichels Antje8, Gerdts Gunnar8, Polymenakou Paraskevi9, Kotoulas Giorgos9, Siam Rania10, 11, Abdallah Rehab Z.10, 11, Sonnenschein Eva C.12, Cariou Thierry5, 6, O'Gara Fergal13, 14, Jackson Stephen12, Orlic Sandi16, Steinke Michael17, Busch Julia18, Duarte BernardoORCID19, Cacador Isabel19, Canning-Clode Joao19, 20, Bobrova Oleksandra21, Marteinsson Viggo22, Reynisson Eyjolfur22, Loureiro Clara Magalhaes23, Luna Gian Marco24, Quero Grazia MarinaORCID24, Loescher Carolin R.25, Kremp Anke26, Delorenzo Marie E.27, Ovreas Lise28, Tolman Jennifer29, Laroche Julie29, Penna Antonella30, Frischer Marc31, Davis Timothy32, Katherine Barker33, Meyer Christopher P.33, Ramos SandraORCID34, Magalhaes CatarinaORCID34, Jude-Lemeilleur Florence35, 36, Leopoldina Aguirre-Macedo Ma37, Wang Shiao38, Poulton Nicole39, Jones Scott40, Collin Rachel41, Fuhrman Jed A.42, 43, Conan Pascal44, Alonso Cecilia45, Stambler Noga46, 47, 48, Goodwin KellyORCID, Yakimov Michael M.49, Baltar FedericoORCID50, Bodrossy LeventeORCID51, Van De Kamp Jodie51, Frampton Dion M. F.51, Ostrowski Martin52, Van Ruth Paul53, Malthouse Paul53, Claus Simon54, Deneudt Klaas54, Mortelmans Jonas54, Pitois Sophie55, Wallom DavidORCID3, Salter Ian44, 56, Costa RodrigoORCID57, Schroeder Declan C.58, Kandil Mahrous M.59, Amaral Valentina45, Biancalana Florencia61, Santana Rafael45, Pedrotti Maria Luiza60, Yoshida Takashi62, Ogata Hiroyuki62, Ingleton Tim64, 68, Munnik Kate65, Rodriguez-Ezpeleta Naiara66, Berteaux-Lecellier Veronique67, Wecker Patricia67, Cancio Ibon69, Vaulot Daniel5, 6, Bienhold Christina1, 56, Ghazal Hassan71, 72, Chaouni Bouchra72, 75, Essayeh Soumya71, Ettamimi Sara72, 74, Zaid El Houcine75, Boukhatem Noureddine72, Bouali Abderrahim72, Chahboune Rajaa71, 76, Barrijal Said76, Timinouni Mohammed78, El Otmani Fatima79, Bennani Mohamed78, Mea Marianna2, Todorova Nadezhda81, Karamfilov Ventzislav81, Ten Hoopen PetraORCID82, Cochrane GuyORCID82, L'Haridon Stephane83, Bizsel Kemal Can84, Vezzi Alessandro85, Lauro Federico M.86, Martin PatrickORCID87, Jensen Rachelle M.88, Hinks Jamie86, Gebbels Susan89, Rosselli Riccardo85, de Pascale Fabio85, Schiavon Riccardo85, Dos Santos AntoninaORCID63, Villar Emilie15, Pesant Stephane91, Cataletto Bruno92, Malfatti Francesca92, Edirisinghe Ranjith93, Silveira Jorge A. Herrera38, Barbier Michele96, Turk Valentina97, Tinta Tinkara97, Fuller Wayne J.98, Salihoglu Ilkay98, Serakinci Nedime98, Ergoren Mahmut Cerkez98, Bresnan Eileen102, Iriberri Juan69, Nyhus Paul Anders Fronth104, Bente Edvardsen105, Karlsen Hans Erik106, Golyshin Peter N.107, Gasol Josep M.108, Moncheva Snejana109, Dzhembekova Nina109, Johnson Zackary110, 111, Sinigalliano Christopher David, Gidley Maribeth Louise112, Zingone AdrianaORCID113, Danovaro Roberto113, 114, Tsiamis George115, Clark Melody S.116, Costa Ana CristinaORCID23, El Bour Monia103, Martins Ana M.23, 99, Collins R. Eric100, Ducluzeau Anne-Lise100, Martinez Jonathan101, Costello Mark J.90, Amaral-Zettler Linda A.94, 95, Gilbert Jack A.73, 77, 80, 94, Davies NeilORCID2, 70, Field Dawn2, 3, Gloeckner Frank Oliver1, 2
Affiliation(s) 1 : Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany.
2 : Jacobs Univ Bremen gGmbH, D-28759 Bremen, Germany.
3 : Univ Oxford, Oxford OX1 3QG, Oxon, England.
4 : Ctr Ecol & Hydrol, Wallingford OX10 8BB, Oxon, England.
5 : Univ Paris 06, CNRS, Stn Biol, F-29680 Roscoff, France.
6 : Univ Paris 06, Sorbonne Univ, Stn Biol, F-29680 Roscoff, France.
7 : Natl Inst Oceanog, Israel Oceanog & Limnol Res, IL-31080 Haifa, Israel.
8 : Biol Anstalt Helgoland, Alfred Wegener Inst, D-27498 Helgoland, Germany.
9 : Hellen Ctr Marine Res, Inst Marine Biol Biotechnol & Aquaculture, Iraklion 71500, Crete, Greece.
10 : Amer Univ Cairo, Biol Dept, New Cairo 11835, Cairo Governora, Egypt.
11 : Amer Univ Cairo, YJ Sci & Technol Res Ctr, New Cairo 11835, Cairo Governora, Egypt.
12 : Tech Univ Denmark, Dept Syst Biol, DK-2800 Lyngby, Denmark.
13 : Natl Univ Ireland Univ Coll Cork, Cork, Ireland.
14 : Curtin Univ, Biomed Sci, Perth, WA 6845, Australia.
15 : Aix Marseille Univ, CNRS, UMR 7256, IGS, F-13288 Marseille, France.
16 : Rudjer Boskovic Inst, Zagreb 10000, Croatia.
17 : Univ Essex, Sch Biol Sci, Colchester CO4 3SQ, Essex, England.
18 : Carl von Ossietzky Univ Oldenburg, Inst Chem & Biol Marine Environm ICBM, D-26383 Wilhemshaven, Germany.
19 : Univ Lisbon, Fac Sci, Marine & Environm Sci Ctr, P-1749016 Lisbon, Portugal.
20 : Smithsonian Environm Res Ctr, Edgewater, MD 21037 USA.
21 : Odessa Natl II Mechnikov Univ, Dept Microbiol Virol & Biotechnol, UA-65082 Odessa, Ukraine.
22 : Matis Ltd, IS-113 Reykjavik, Iceland.
23 : Univ Acores, Dept Biol, InBio CIBIO, P-9501801 Ponta Delgada, Portugal.
24 : Inst Marine Sci CNR ISMAR, Natl Res Council, I-30122 Venice, Italy.
25 : GEOMAR, Inst Microbiol, D-24118 Kiel, Germany.
26 : Finnish Environm Inst, Marine Res Ctr, Helsinki 00560, Finland.
27 : NOAA, Natl Ocean Serv, NCCOS, Ctr Coastal Environm Hlth & Biomol Res, Charleston, SC 29412 USA.
28 : Univ Bergen, Dept Biol, N-5020 Bergen, Norway.
29 : Dalhousie Univ, LaRoche Res Grp, Dept Biol, Halifax, NS B3H 4R2, Canada.
30 : Univ Urbino, Dept Biomol Sci, I-61121 Pesaro, Italy.
31 : Univ Georgia, Skidaway Inst Oceanog, Savannah, GA 31411 USA.
32 : NOAA, Great Lakes Environm Res Lab, Ann Arbor, MI 48108 USA.
33 : Smithsonian Inst, Natl Museum Nat Hist, Washington, DC 20013 USA.
34 : Univ Porto, Interdisciplinary Ctr Environm & Marine Res, CIIMAR, P-4050123 Oporto, Portugal.
35 : CNRS, Stn Marine Arcachon, F-33120 Arcachon, France.
36 : Univ Bordeaux, F-33120 Arcachon, France.
37 : Ctr Invest & Estudios Avanzados CINVESTAV, Unidad Merida, Yucatan 97310, Mexico.
38 : Univ So Mississippi, Dept Biol Sci, Hattiesburg, MS 39406 USA.
39 : Bigelow Lab Ocean Sci, East Boothbay, ME 04544 USA.
40 : Smithsonian Marine Stn, Ft Pierce, FL 34949 USA.
41 : Smithsonian Trop Res Inst, Balboa Ancon, Panama.
42 : Univ So Calif, Wrigley Inst Environm Studies, Los Angeles, CA 90089 USA.
43 : Univ So Calif, Dept Biol Sci, Los Angeles, CA 90089 USA.
44 : Univ Paris 06, Sorbonne Univ, CNRS, UMR7621,Lab Oceanog Microbienne,Observ Oceanol, F-66651 Banyuls Sur Mer, France.
45 : Univ Republ, Ctr Univ Reg Este, Microbial Ecol Aquat Transit Syst Res Grp, Rocha, Uruguay.
46 : Bar Ilan Univ, Mina & Everard Goodman Fac Life Sci, IL-5290002 Ramat Gan, Israel.
47 : Interuniv Inst Marine Sci Eilat, IL-88103 Elat, Israel.
48 : NOAA, Atlantic Oceanog & Meteorol Lab, Ocean Chem & Ecosyst Div, Miami, FL 33149 USA.
49 : CNR, IAMC, Inst Coastal Marine Environm, I-98122 Messina, Sicily, Italy.
50 : Univ Otago, Dept Marine Sci, Dunedin 9054, New Zealand.
51 : CSIRO Oceans & Atmosphere Flagship, Hobart, Tas 7000, Australia.
52 : Macquarie Univ, Dept Chem & Biomol Sci, Sydney, NSW 2109, Australia.
53 : South Australian Res & Dev Inst SARDI Aquat Sci, Henley Beach, SA 5022, Australia.
54 : Flanders Marine Inst, B-8400 Oostende, Belgium.
55 : Ctr Environm Fisheries & Aquaculture Sci CEFAS, Lowestoft NR33 0HT, Suffolk, England.
56 : Helmholtz Zentrum Polar & Meeresforsch, Alfred Wegener Inst, D-27570 Bremerhaven, Germany.
57 : Univ Algarve, Ctr Marine Sci, Microbial Ecol & Evolut Res Grp, P-8005139 Faro, Portugal.
58 : Marine Biol Assoc UK, Plymouth, Devon, England.
59 : Univ Alexandria, Fac Agr, Soil & Water Sci Dept, Alexandria 21545, Egypt.
60 : Univ Paris 06, Univ Paris 04, CNRS, UMR 7093,LOV,Observ Oceanol, Paris, France.
61 : Argentine Inst Oceanog, Marine Biogeochem, RA-8000 Bahia Blanca, Buenos Aires, Argentina.
62 : Kyoto Univ, Grad Sch Agr, Sakyo Ku, Kyoto 6068502, Japan.
63 : IPMA, Dept Sea & Marine Resources, P-1449006 Lisbon, Portugal.
64 : New South Wales Off Environm & Heritage, Waters Wetlands & Coasts, Sydney, NSW, Australia.
65 : Lwandle Technol, Cape Town, South Africa.
66 : AZTI, Marine Res Div, Sukarrieta 48395, Bizkaia, Spain.
67 : UPVD, EPHE, CNRS, CRIOBE,USR3278,LabEx Corail, F-98729 Papetoai Moorea, Fr Polynesia.
68 : Univ Tasmania, Antarctic & Southern Ocean Studies, Hobart, Tas 7004, Australia.
69 : Univ Basque Country, E-48080 Bilbao, Basque Country, Spain.
70 : Univ Calif Berkeley, Gump South Pacific Res Stn, Moorea 98728, Fr Polynesia.
71 : Univ Mohammed Premier, Polydisciplinary Fac Nador, Selouane, Nador, Morocco.
72 : Univ Mohammed Premier, Lab Genet & Biotechnol, Oujda, Morocco.
73 : Zhejiang Univ, Coll Environm & Resource Sci, Hangzhou 310058, Zhejiang, Peoples R China.
74 : Univ Sidi Mohammed Ben Abdallah, Polydisciplinary Fac Taza, Fes, Morocco.
75 : Univ Mohammed Fifth Rabat, Fac Sci Rabat, Rabat, Morocco.
76 : Univ Abdelmalek Essaadi, Fac Sci & Tech Tanger, Tanger, Morocco.
77 : Argonne Natl Lab, Biosci Div, Inst Genom & Syst Biol, Argonne, IL 60439 USA.
78 : Pasteur Inst Morocco, Casablanca 20100, Morocco.
79 : Chouaib Doukkali Univ, Fac Sci, Dept Biol, Microbiol Hlth & Environm Team, El Jadida, Morocco.
80 : Univ Chicago, Chicago, IL 60637 USA.
81 : Bulgarian Acad Sci, Inst Biodivers & Ecosyst Res IBER, BU-1113 Sofia, Bulgaria.
82 : European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Cambridge CB10 1SD, Cambs, England.
83 : UBO, UEB, IUEM, F-29280 Plouzane, France.
84 : Dokuz Eylul Univ DEU, Inst Marine Sci & Technol IMST, I-35340 Izmir, Balcova, Turkey.
85 : Univ Padua, Dept Biol, I-35121 Padua, Italy.
86 : Singapore Ctr Environm Life Sci Engn, Singapore 637551, Singapore.
87 : Nanyang Technol Univ, Earth Observ Singapore, Singapore 639798, Singapore.
88 : Indigo V Expedit, Singapore 098497, Singapore.
89 : Newcastle Univ, Sch Marine Sci & Technol, Dove Marine Lab, Cullercoats NE30 4PZ, Tyne & Wear, England.
90 : Univ Auckland, Inst Marine Sci, Auckland 1142, New Zealand.
91 : Univ Bremen, PANGAEA Data Publisher Earth & Environm Sci, MARUM Ctr Marine Environm Sci, D-28359 Bremen, Germany.
92 : Natl Inst Oceanog & Expt Geophys, OGS, I-34151 Trieste, Italy.
93 : Rajarata Univ Sri Lanka, Fac Sci Appl, Dept Phys Sci, Mihintale, Sri Lanka.
94 : Marine Biol Lab, Woods Hole, MA 02543 USA.
95 : Brown Univ, Dept Earth Environm & Planetary Sci, Providence, RI 02912 USA.
96 : Mediterranean Sci Commiss, Monaco 98000, Monaco.
97 : Natl Inst Biol, Marine Biol Stn, Piran 6330, Slovenia.
98 : Near East Univ, Nicosia 99138, Northern Cyprus, Cyprus.
99 : Univ Azores, Dept Oceanog & Fisheries, PT-9901862 Horta, Portugal.
100 : Univ Alaska Fairbanks, Fairbanks, AK 99775 USA.
101 : Univ Hawaii Manoa, Kewalo Marine Lab, Honolulu, HI 96813 USA.
102 : Marine Scotland Marine Lab, Phytoplankton Ecol, Aberdeen AB11 9DB, Aberdeen, Scotland.
103 : Inst Natl Sci & Technol Mer INSTM, Salammbo 2025, Tunisia.
104 : Kind Blue Project ABS & Citizen Sci, N-0372 Oslo, Norway.
105 : Univ Oslo, Dept Biosci, Sect Aquat Biol & Toxicol, N-0316 Oslo, Norway.
106 : Marine Biol Res Stn, Drobak Field Stn, N-1440 Drobak, Norway.
107 : Bangor Univ, Coll Nat Sci, Sch Biol Sci, Bangor LL57 2UW, Gwynedd, Wales.
108 : CSIC, Inst Ciencies Mar, Dept Biol Marina & Oceanog, E-08003 Barcelona, Catalunya, Spain.
109 : Fridtjof Nansen Inst Oceanol, Varna 9000, Bulgaria.
110 : Duke Univ, Nicholas Sch Environm, Beaufort, NC 28516 USA.
111 : Duke Univ, Dept Biol, Beaufort, NC 28516 USA.
112 : Univ Miami, Rosenstiel Sch Marine & Atmospher Sci, Cooperat Inst Marine & Atmospher Sci, Miami, FL 33149 USA.
113 : Stn Zool Anton Dohrn, I-80121 Naples, Italy.
114 : Polytech Univ Marche, Dept Life & Environm Sci, I-60131 Ancona, Italy.
115 : Univ Patras, Dept Environm & Nat Resources Management, Agrinion 30100, Greece.
116 : NERC, British Antarctic Survey, Cambridge CB3 0ET, Cambs, England.
Source Gigascience (2047-217X) (Biomed Central Ltd), 2015-06 , Vol. 4 , N. 1 , P. 1-5
DOI 10.1186/s13742-015-0066-5
WOS© Times Cited 131
Keyword(s) Ocean sampling day, OSD, Biodiversity, Genomics, Health Index, Bacteria, Microorganism, Metagenomics, Marine, Micro B3, Standards
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world's oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.
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Kopf Anna, Bicak Mesude, Kottmann Renzo, Schnetzer Julia, Kostadinov Ivaylo, Lehmann Katja, Fernandez-Guerra Antonio, Jeanthon Christian, Rahav Eyal, Ullrich Matthias, Wichels Antje, Gerdts Gunnar, Polymenakou Paraskevi, Kotoulas Giorgos, Siam Rania, Abdallah Rehab Z., Sonnenschein Eva C., Cariou Thierry, O'Gara Fergal, Jackson Stephen, Orlic Sandi, Steinke Michael, Busch Julia, Duarte Bernardo, Cacador Isabel, Canning-Clode Joao, Bobrova Oleksandra, Marteinsson Viggo, Reynisson Eyjolfur, Loureiro Clara Magalhaes, Luna Gian Marco, Quero Grazia Marina, Loescher Carolin R., Kremp Anke, Delorenzo Marie E., Ovreas Lise, Tolman Jennifer, Laroche Julie, Penna Antonella, Frischer Marc, Davis Timothy, Katherine Barker, Meyer Christopher P., Ramos Sandra, Magalhaes Catarina, Jude-Lemeilleur Florence, Leopoldina Aguirre-Macedo Ma, Wang Shiao, Poulton Nicole, Jones Scott, Collin Rachel, Fuhrman Jed A., Conan Pascal, Alonso Cecilia, Stambler Noga, Goodwin Kelly, Yakimov Michael M., Baltar Federico, Bodrossy Levente, Van De Kamp Jodie, Frampton Dion M. F., Ostrowski Martin, Van Ruth Paul, Malthouse Paul, Claus Simon, Deneudt Klaas, Mortelmans Jonas, Pitois Sophie, Wallom David, Salter Ian, Costa Rodrigo, Schroeder Declan C., Kandil Mahrous M., Amaral Valentina, Biancalana Florencia, Santana Rafael, Pedrotti Maria Luiza, Yoshida Takashi, Ogata Hiroyuki, Ingleton Tim, Munnik Kate, Rodriguez-Ezpeleta Naiara, Berteaux-Lecellier Veronique, Wecker Patricia, Cancio Ibon, Vaulot Daniel, Bienhold Christina, Ghazal Hassan, Chaouni Bouchra, Essayeh Soumya, Ettamimi Sara, Zaid El Houcine, Boukhatem Noureddine, Bouali Abderrahim, Chahboune Rajaa, Barrijal Said, Timinouni Mohammed, El Otmani Fatima, Bennani Mohamed, Mea Marianna, Todorova Nadezhda, Karamfilov Ventzislav, Ten Hoopen Petra, Cochrane Guy, L'Haridon Stephane, Bizsel Kemal Can, Vezzi Alessandro, Lauro Federico M., Martin Patrick, Jensen Rachelle M., Hinks Jamie, Gebbels Susan, Rosselli Riccardo, de Pascale Fabio, Schiavon Riccardo, Dos Santos Antonina, Villar Emilie, Pesant Stephane, Cataletto Bruno, Malfatti Francesca, Edirisinghe Ranjith, Silveira Jorge A. Herrera, Barbier Michele, Turk Valentina, Tinta Tinkara, Fuller Wayne J., Salihoglu Ilkay, Serakinci Nedime, Ergoren Mahmut Cerkez, Bresnan Eileen, Iriberri Juan, Nyhus Paul Anders Fronth, Bente Edvardsen, Karlsen Hans Erik, Golyshin Peter N., Gasol Josep M., Moncheva Snejana, Dzhembekova Nina, Johnson Zackary, Sinigalliano Christopher David, Gidley Maribeth Louise, Zingone Adriana, Danovaro Roberto, Tsiamis George, Clark Melody S., Costa Ana Cristina, El Bour Monia, Martins Ana M., Collins R. Eric, Ducluzeau Anne-Lise, Martinez Jonathan, Costello Mark J., Amaral-Zettler Linda A., Gilbert Jack A., Davies Neil, Field Dawn, Gloeckner Frank Oliver (2015). The ocean sampling day consortium. Gigascience, 4(1), 1-5. Publisher's official version : https://doi.org/10.1186/s13742-015-0066-5 , Open Access version : https://archimer.ifremer.fr/doc/00371/48262/