DOI 10.1371/journal.pone.0174338 Rimicaris exoculata is a caridean shrimp that dominates the fauna at several hydrothermal vent sites of the Mid-Atlantic Ridge. It has two distinct and stable microbial communities. One of these epibiontic bacterial communities is located in the shrimp gut and has a distribution and role that are poorly understood. The second colonizes its enlarged gill chamber and is involved in host nutrition. It is eliminated after each molt, and has colonization processes reminiscent of those of a biofilm. The presence and expression of genes usually involved in quorum sensing (QS) were then studied. At four sites, Rainbow, TAG, Snake Pit and Logatchev, two lux genes were identified in the R. exoculata epibiontic community at different shrimp molt stages and life stages. RT-PCR experiments highlighted lux gene expression activity at TAG, Snake Pit and Rainbow vent sites. Their potential QS activity and their possible roles in epibiont colonization processes are discussed. Moreover, phylogenetic analysis has shown the presence of three clades for luxS (Epsilonproteobacteria) and four clades for luxR (Gammaproteobacteria) genes, each clade being restricted to a single site. These genes are more divergent than the 16S rRNA one. They could therefore be used as biogeographical genetic markers.
| File | Pages | Size | Access | |
|---|---|---|---|---|
Publisher's official version | 19 | 1 Mo | ||
S1 File. The SI File is a more detailed description of bioinformatic studies followed by extraction and quantification of N-acylhomoserine lactones (AHLs) description. | 11 | 219 Ko | ||
S1 Fig. LuxS protein sequences alignment. | - | 5 Mo | ||
S2 Fig. LuxR protein analysis | - | 8 Mo | ||
S3 Fig. Chromatograph of N-acylhomoserine lactone extraction. | - | 1 Mo |
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