A DNA barcode reference library of French Polynesian shore fishes

Type Article
Date 2019-07
Language English
Author(s) Delrieu-Trottin Erwan1, 2, 3, Williams Jeffrey T.4, Pitassy Diane4, Driskell Amy5, Hubert Nicolas1, Viviani Jeremie3, 6, 7, Cribb Thomas H.8, Espiau Benoit3, Galzin Rene3, Kulbicki Michel9, de Loma Thierry Lison3, Meyer Christopher10, Mourier JohannORCID3, 11, Mou-Tham Gerard9, Parravicini Valeriano3, Plantard Patrick3, Sasal Pierre3, Siu Gilles3, Tolou Nathalie3, Veuille Michel12, Weigt Lee5, Planes Serge3
Affiliation(s) 1 : Univ Montpellier, CNRS, UMR 226, ISEM,IRD,EPHE, Pl Eugene Bataillon,CC 065, F-34095 Montpellier 05, France.
2 : Univ Berlin, Leibniz Inst Evolut & Biodivers Forsch Humboldt, Museum Nat Kunde, Invalidenstr 43, D-10115 Berlin, Germany.
3 : Univ Perpignan, PSL Res Univ, CRIOBE, EPHE,UPVD,CNRS,USR 3278, 58 Ave Paul Alduy, F-66860 Perpignan, France.
4 : Smithsonian Inst, Div Fishes, Dept Vertebrate Zool, Natl Museum Nat Hist, 4210 Silver Hill Rd, Suitland, MD 20746 USA.
5 : Smithsonian Inst, Labs Analyt Biol, Natl Museum Nat Hist, Washington, DC 20013 USA.
6 : Univ Lyon, Ecole Normale Super Lyon, Dept Biol, UCB Lyon1, 46 Allee Italie, Lyon, France.
7 : Univ UCB Lyon1, Team Evolut Vertebrate Dentit, Inst Funct Genom Lyon, ENS Lyon,CNRS,UMR 5242, 46 Allee Italie, Lyon, France.
8 : Univ Queensland, Sch Biol Sci, Brisbane, Qld 4072, Australia.
9 : UPVD, Inst Rech Dev, LABEX CORAIL, UR 227 CoReUs, F-66000 Perpignan, France.
10 : Smithsonian Inst, Dept Invertebrate Zool, Natl Museum Nat Hist, Washington, DC 20560 USA.
11 : Univ Montpellier, IFREMER, Stn Ifremer Sete, MARBEC,IRD,CNRS,UMR 248, Jean Monnet,CS 30171, F-34203 Sete, France.
12 : PSL, UPMC, EPHE,CNRS,UMR 7205, Inst Systemat,Evolut,Biodivers ISYEB,MNHN, 57 Rue Cuvier,CP39, F-75005 Paris, France.
Source Scientific Data (2052-4463) (Nature Publishing Group), 2019-07 , Vol. 6 , N. 114 , P. 8p.
DOI 10.1038/s41597-019-0123-5
WOS© Times Cited 18
Abstract The emergence of DNA barcoding and metabarcoding opened new ways to study biological diversity, however, the completion of DNA barcode libraries is fundamental for such approaches to succeed. This dataset is a DNA barcode reference library (fragment of Cytochrome Oxydase I gene) for 2,190 specimens representing at least 540 species of shore fishes collected over 10 years at 154 sites across the four volcanic archipelagos of French Polynesia; the Austral, Gambier, Marquesas and Society Islands, a 5,000,000 km(2) area. At present, 65% of the known shore fish species of these archipelagoes possess a DNA barcode associated with preserved, photographed, tissue sampled and cataloged specimens, and extensive collection locality data. This dataset represents one of the most comprehensive DNA barcoding efforts for a vertebrate fauna to date. Considering the challenges associated with the conservation of coral reef fishes and the difficulties of accurately identifying species using morphological characters, this publicly available library is expected to be helpful for both authorities and academics in various fields.
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Delrieu-Trottin Erwan, Williams Jeffrey T., Pitassy Diane, Driskell Amy, Hubert Nicolas, Viviani Jeremie, Cribb Thomas H., Espiau Benoit, Galzin Rene, Kulbicki Michel, de Loma Thierry Lison, Meyer Christopher, Mourier Johann, Mou-Tham Gerard, Parravicini Valeriano, Plantard Patrick, Sasal Pierre, Siu Gilles, Tolou Nathalie, Veuille Michel, Weigt Lee, Planes Serge (2019). A DNA barcode reference library of French Polynesian shore fishes. Scientific Data, 6(114), 8p. Publisher's official version : https://doi.org/10.1038/s41597-019-0123-5 , Open Access version : https://archimer.ifremer.fr/doc/00508/61942/