The main objective was to study relationships between the regional biogeography of Dinophysis species and water masses circulation along the European Atlantic coast. Hydrodynamic connectivities were estimated with a Lagrangian approach. Available and validated physical hindcasts from regional hydrodynamical models, with different resolutions were used. The target area is the Bay of Biscay (NE Atlantic) and connectivity was evaluated between a set of spatially distributed stations and during temporally specified periods. Different indexes related to connectivity properties such as mean, median, most frequent transit times were calculated. To illustrate the dispersion pattern, a molecular approach was jointly set-up to describe the species composition of this genus. At the seasonal scale, a high connectivity within the Bay of Biscay was observed with a slight northward connectivity from Galicia coastal waters to the Shelf of the Bay of Biscay. By comparison to the connectivity between shelf waters of French Brittany and English Channel waters, a higher connectivity between shelf waters of French Brittany and the Celtic Sea shelf was observed. The species mixing in the Bay of Biscay from Galicia waters to the Celtic Sea was confirmed by the genetic analyses despite the absence of Dinophysis sacculus in natural samples. The molecular methodology developed for this work, permitting at least the description of the species composition, also highlights, at the European scale, an unexpected low genetic variability which echoes the complex taxonomic classification inside the genus and the difficulties encountered by national monitoring programs to reach a taxonomic resolution at species level. It is now necessary to start some monitoring at the species level before realizing mid- or long-term forecasts.