DNA-binding mechanism and evolution of replication protein A

Type Article
Date 2023-04
Language English
Author(s) Madru ClémentORCID1, Martínez-Carranza MarkelORCID1, Laurent Sebastien2, Alberti Alessandra C.1, Chevreuil Maelenn3, Raynal BertrandORCID3, Haouz Ahmed4, Le Meur Rémy A.5, Delarue MarcORCID1, Henneke GhislaineORCID2, Flament DidierORCID2, Krupovic MartORCID6, Legrand PierreORCID1, 7, Sauguet LudovicORCID1
Affiliation(s) 1 : Architecture and Dynamics of Biological Macromolecules, Institut Pasteur, Université Paris Cité, CNRS, UMR 3528, Paris, France
2 : Univ Brest, Ifremer, CNRS, Biologie et Ecologie des Ecoystèmes marins profonds (BEEP), F-29280, Plouzané, France
3 : Molecular Biophysics Platform, C2RT, Institut Pasteur, Université Paris Cité, CNRS, UMR 3528, Paris, France
4 : Crystallography Platform, C2RT, Institut Pasteur, Université Paris Cité, CNRS, UMR 3528, Paris, France
5 : Biological NMR Platform & HDX, C2RT, Institut Pasteur, Université Paris Cité, CNRS, UMR 3528, Paris, France
6 : Archaeal Virology Unit, Institut Pasteur, Université Paris Cité, CNRS, UMR 6047, Paris, France
7 : Synchrotron SOLEIL, HelioBio group, L’Orme des Merisiers, 91190, Saint-Aubin, France
Source Nature Communications (2041-1723) (Springer Science and Business Media LLC), 2023-04 , Vol. 14 , N. 1 , P. 2326 (14p.)
DOI 10.1038/s41467-023-38048-w
WOS© Times Cited 4
Abstract

Replication Protein A (RPA) is a heterotrimeric single stranded DNA-binding protein with essential roles in DNA replication, recombination and repair. Little is known about the structure of RPA in Archaea, the third domain of life. By using an integrative structural, biochemical and biophysical approach, we extensively characterize RPA from Pyrococcus abyssi in the presence and absence of DNA. The obtained X-ray and cryo-EM structures reveal that the trimerization core and interactions promoting RPA clustering on ssDNA are shared between archaea and eukaryotes. However, we also identified a helical domain named AROD (Acidic Rpa1 OB-binding Domain), and showed that, in Archaea, RPA forms an unanticipated tetrameric supercomplex in the absence of DNA. The four RPA molecules clustered within the tetramer could efficiently coat and protect stretches of ssDNA created by the advancing replisome. Finally, our results provide insights into the evolution of this primordial replication factor in eukaryotes.

Full Text
File Pages Size Access
Publisher's official version 14 4 MB Open access
Supplementary Information 18 41 MB Open access
Peer Review File 2 253 KB Open access
Description of Additional Supplementary Files 1 116 KB Open access
Supplementary Movie 1 16 MB Open access
Supplementary Movie 2 45 MB Open access
Reporting Summary 2 1 MB Open access
Source Data 20 MB Open access
Top of the page

How to cite 

Madru Clément, Martínez-Carranza Markel, Laurent Sebastien, Alberti Alessandra C., Chevreuil Maelenn, Raynal Bertrand, Haouz Ahmed, Le Meur Rémy A., Delarue Marc, Henneke Ghislaine, Flament Didier, Krupovic Mart, Legrand Pierre, Sauguet Ludovic (2023). DNA-binding mechanism and evolution of replication protein A. Nature Communications, 14(1), 2326 (14p.). Publisher's official version : https://doi.org/10.1038/s41467-023-38048-w , Open Access version : https://archimer.ifremer.fr/doc/00834/94613/