DNA-binding mechanism and evolution of replication protein A
Type | Article | ||||||||||||||||||||||||||||||||||||
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Date | 2023-04 | ||||||||||||||||||||||||||||||||||||
Language | English | ||||||||||||||||||||||||||||||||||||
Author(s) | Madru Clément![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
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Affiliation(s) | 1 : Architecture and Dynamics of Biological Macromolecules, Institut Pasteur, Université Paris Cité, CNRS, UMR 3528, Paris, France 2 : Univ Brest, Ifremer, CNRS, Biologie et Ecologie des Ecoystèmes marins profonds (BEEP), F-29280, Plouzané, France 3 : Molecular Biophysics Platform, C2RT, Institut Pasteur, Université Paris Cité, CNRS, UMR 3528, Paris, France 4 : Crystallography Platform, C2RT, Institut Pasteur, Université Paris Cité, CNRS, UMR 3528, Paris, France 5 : Biological NMR Platform & HDX, C2RT, Institut Pasteur, Université Paris Cité, CNRS, UMR 3528, Paris, France 6 : Archaeal Virology Unit, Institut Pasteur, Université Paris Cité, CNRS, UMR 6047, Paris, France 7 : Synchrotron SOLEIL, HelioBio group, L’Orme des Merisiers, 91190, Saint-Aubin, France |
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Source | Nature Communications (2041-1723) (Springer Science and Business Media LLC), 2023-04 , Vol. 14 , N. 1 , P. 2326 (14p.) | ||||||||||||||||||||||||||||||||||||
DOI | 10.1038/s41467-023-38048-w | ||||||||||||||||||||||||||||||||||||
WOS© Times Cited | 1 | ||||||||||||||||||||||||||||||||||||
Abstract | Replication Protein A (RPA) is a heterotrimeric single stranded DNA-binding protein with essential roles in DNA replication, recombination and repair. Little is known about the structure of RPA in Archaea, the third domain of life. By using an integrative structural, biochemical and biophysical approach, we extensively characterize RPA from Pyrococcus abyssi in the presence and absence of DNA. The obtained X-ray and cryo-EM structures reveal that the trimerization core and interactions promoting RPA clustering on ssDNA are shared between archaea and eukaryotes. However, we also identified a helical domain named AROD (Acidic Rpa1 OB-binding Domain), and showed that, in Archaea, RPA forms an unanticipated tetrameric supercomplex in the absence of DNA. The four RPA molecules clustered within the tetramer could efficiently coat and protect stretches of ssDNA created by the advancing replisome. Finally, our results provide insights into the evolution of this primordial replication factor in eukaryotes. |
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