Strong large-scale winds can relay their energy to the ocean bottom and elicit an almost immediate intraseasonal barotropic (depth independent) response in the ocean. The intense winds associated with the Madden-Julian Oscillation over the Maritime Continent generate significant intraseasonal basin-wide barotropic sea level variability in the tropical Indian Ocean. Here we show, using a numerical model and a network of in-situ bottom pressure recorders, that the concerted barotropic response of the Indian and the Pacific Ocean to these winds leads to an intraseasonal see-saw of oceanic mass in the Indo-Pacific basin. This global-scale mass shift is unexpectedly fast, as we show that the mass field of the entire Indo-Pacific basin is dynamically adjusted to Madden-Julian Oscillation in a few days. We find this large-scale ocean see-saw, induced by the Madden-Julian Oscillation, has a detectable influence on the Earth’s polar axis motion, in particular during the strong see-saw of early 2013.