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Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph
Nitrogen (N2) fixation, or diazotrophy, supports a large part of primary production in oceans. Culture-independent approaches highlighted the presence in abundance of marine non-cyanobacterial diazotrophs (NCD) but their ecophysiology remains elusive, mostly because of the low number of isolated NCD and because of the lack of available genetic tools for these isolates. Here, a dual genetic and functional approach allowed unveiling the ecophysiology of a marine NCD affiliated to the species Vibrio diazotrophicus. Physiological characterization of the first marine NCD mutant obtained so far was performed using a soft-gellan assay, demonstrating that a ΔnifH mutant in not able to grow in nitrogen-free media. Furthermore, we demonstrated that V. diazotrophicus produces a thick biofilm under diazotrophic conditions, suggesting biofilm production as an adaptive response of this NCD to cope with the inhibition of nitrogen-fixation by molecular oxygen. Finally, the genomic signature of V. diazotrophicus is essentially absent from metagenomic data of Tara Ocean expeditions, despite having been isolated from various marine environments. We think that the genetically tractable V. diazotrophicus strain used in this study may serve as an ideal model to study the ecophysiology of these overlooked procaryotic group.
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Publisher's official version | 31 | 1 Mo | ||
Supplementary Figure S1. O2 concentration profile within the soft-gellan tubes. (A) Vertical profile of dissolved O2 concentrations (μmol O2.ml-1 ), starting at the ... | 1 | 2 Mo | ||
Supplementary Figure S2. Soft-gellan assay demonstrating bacterial growth under appropriate microoxic conditions. The “+” and “-“ indicate the presence or absence ... | 1 | 35 Mo | ||
Supplementary Figure S3. Microscopy picture of V. diazotrophicus NS1 pFD086 cells grown under microoxic condition in a nitrogen-free MDV soft-gellan medium. Cells from the growing ring were ... | 1 | 272 Ko | ||
Supplementary Figure S4. (A) View of the top of the biofilm produced by V. diazotrophicus NS1 pFD086 after 48 hours of incubation in a flow cell. (B) three-dimensional representation showing the... | 1 | 587 Ko | ||
Table S1. Strains used in this study. | - | 15 Ko | ||
Table S2. Plasmids used in this study. | - | 17 Ko | ||
Table S3. Primers used in this study | - | 14 Ko | ||
Table S4. Supplementary Tables | 1 | 44 Ko | ||
Table S5. Supplementary Tables | 10 | 67 Ko |